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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G107400.1.p |
| Common Name | GLYMA_07G107400, LOC100784091 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 284aa MW: 31247 Da PI: 10.2436 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G107400.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 351.4 | 2e-107 | 1 | 283 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdn 79
md d+ + rn+gyyepa+s+k++lglqlmss++e+ + + ls++++a+++rd m++ +rd+++++ ++
Glyma.07G107400.1.p 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSMPEKPLIGGCNAAVLSGTNGAFHHRDiggmpqatypMEY-MRDAWISQ--------RD 81
888888888*************************9988776666669************************.9*******........78 PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelre.eeklealpieeaaeeakekkkkkkrqrakkpkekkakkkk 168
k++++++++++ ++ +++t+s++++q+ ++ el++ e+ +e+ p++e +++ ++kkrq +k+pk++kakk+k
Glyma.07G107400.1.p 82 KYMNMIPTNHN--------YGGIPETSSAHQIQM-------IPPLELPKeERPVEEAPVVE----KSNGGTRKKRQGPKVPKSPKAKKPK 152
9******9997........99************9.......33444333033344444443....445567788899************* PP
GAGA_bind 169 kksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagr 258
+ ++++k++++++ +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagr
Glyma.07G107400.1.p 153 RGPRAPKDENAPSV--QRARVPKKTTEIVINGIDMDISSIPIPVCSCTGAPQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGR 240
*9988877777666..79************************************************************************ PP
GAGA_bind 259 KmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
KmS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir
Glyma.07G107400.1.p 241 KMSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 283
******************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 284 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSMPEKPLIG GCNAAVLSGT NGAFHHRDIG 60
GMPQATYPME YMRDAWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIPP LELPKEERPV 120
EEAPVVEKSN GGTRKKRQGP KVPKSPKAKK PKRGPRAPKD ENAPSVQRAR VPKKTTEIVI 180
NGIDMDISSI PIPVCSCTGA PQQCYKWGSG GWQSACCTTG MSVYPLPMST KRRGARIAGR 240
KMSIGAFKKV LEKLAAEGYN FSNPIDLRTY WAKHGTNKFV TIR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
