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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.07G107300.1.p |
| Common Name | GLYMA_07G107300, LOC100783209 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
BBR-BPC |
| Protein Properties |
Length: 283aa MW: 31293.1 Da PI: 10.4484 |
| Description |
BBR-BPC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.07G107300.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GAGA_bind | 351.8 | 1.5e-107 | 1 | 282 | 1 | 301 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerd..........maflqrdkalaernkalverdn 79
md d+ + rn+gyyepa+s+k++lglqlmss++e+ + + l+++++a+++rd +++ +rd+++++ ++
Glyma.07G107300.1.p 1 MDGDNGLNiRNWGYYEPATSFKSHLGLQLMSSLPEKPLIGGRNAVVLAGTDGAFHHRDiggmpqatypIEY-MRDTWISQ--------RD 81
888888888*************************999887777777********************99999.9*******........78 PP
GAGA_bind 80 kllalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkk 169
k++++++++++ ++ +++t+s++++q++ + + + +e++p+eea+ ++k + ++kkrq +k+pk++kakk+k+
Glyma.07G107300.1.p 82 KYMNMIPTNHN--------YGGIPETSSAHQIQMI-----QAPELP------KEEKPVEEAPVVKKANGTRKKRQGPKVPKSPKAKKPKR 152
9******9997........999************3.....333223......3458999999999999********************** PP
GAGA_bind 170 ksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrK 259
++++k++++++ +r++ +kk++++v+ng+++D+s++P+PvCsCtGa++qCYkWG+GGWqSaCCtt +SvyPLP+stkrrgaRiagrK
Glyma.07G107300.1.p 153 VPRAPKDENAPAV--QRARVPKKTTEIVINGIDMDISRIPIPVCSCTGATQQCYKWGSGGWQSACCTTGMSVYPLPMSTKRRGARIAGRK 240
9999988888777..79************************************************************************* PP
GAGA_bind 260 mSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
mS gafkk+LekLaaeGy++snp+DL+++WAkHGtnkfvtir
Glyma.07G107300.1.p 241 MSIGAFKKVLEKLAAEGYNFSNPIDLRTYWAKHGTNKFVTIR 282
*****************************************8 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 283 aa
Download sequence Send
to blast |
MDGDNGLNIR NWGYYEPATS FKSHLGLQLM SSLPEKPLIG GRNAVVLAGT DGAFHHRDIG 60
GMPQATYPIE YMRDTWISQR DKYMNMIPTN HNYGGIPETS SAHQIQMIQA PELPKEEKPV 120
EEAPVVKKAN GTRKKRQGPK VPKSPKAKKP KRVPRAPKDE NAPAVQRARV PKKTTEIVIN 180
GIDMDISRIP IPVCSCTGAT QQCYKWGSGG WQSACCTTGM SVYPLPMSTK RRGARIAGRK 240
MSIGAFKKVL EKLAAEGYNF SNPIDLRTYW AKHGTNKFVT IR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Early detected in the floral meristem and floral organ primordia. At later stages, expressed in all floral organs and in particular in the ovule. {ECO:0000269|PubMed:15722463}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in leaf and sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in the whole ovule. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Negatively regulates the homeotic gene AGL11/STK, which controls ovule primordium identity, by a cooperative binding to purine-rich elements present in the regulatory sequence leading to DNA conformational changes. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:15722463}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF502431 | 0.0 | AF502431.1 Glycine max GAGA-binding protein (gbp) mRNA, complete cds. |
| GenBank | BT093384 | 0.0 | BT093384.1 Soybean clone JCVI-FLGm-17A2 unknown mRNA. |
