PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G104700.2.p
Common NameGLYMA_07G104700
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 1201aa    MW: 128757 Da    PI: 8.1422
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G104700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.51.2e-07423441119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+++CH G C+pC+
  Glyma.07G104700.2.p 423 CGRHRCERICHVGSCDPCK 441
                          ******************8 PP
2zf-NF-X122.23e-07518535118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H+C++ CH G+CppC
  Glyma.07G104700.2.p 518 CGMHSCKEACHVGECPPC 535
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.29E-6244315No hitNo description
PROSITE profilePS500168.698251314IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590254311IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.509254312IPR001841Zinc finger, RING-type
CDDcd060084.12E-6345406No hitNo description
SMARTSM004380.05368386IPR000967Zinc finger, NF-X1-type
PfamPF014224370385IPR000967Zinc finger, NF-X1-type
CDDcd060086.08E-12413461No hitNo description
SMARTSM004384.0E-5423442IPR000967Zinc finger, NF-X1-type
PfamPF014225.6E-6423441IPR000967Zinc finger, NF-X1-type
CDDcd060082.12E-12508556No hitNo description
SMARTSM004383.5E-5518537IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-5518535IPR000967Zinc finger, NF-X1-type
PfamPF0142220576587IPR000967Zinc finger, NF-X1-type
CDDcd060084.16E-8606649No hitNo description
SMARTSM004380.083616635IPR000967Zinc finger, NF-X1-type
PfamPF014220.72616633IPR000967Zinc finger, NF-X1-type
CDDcd060084.08E-6663711No hitNo description
SMARTSM004380.0043673691IPR000967Zinc finger, NF-X1-type
PfamPF014227.7673690IPR000967Zinc finger, NF-X1-type
CDDcd060089.87E-5716774No hitNo description
SMARTSM004383.8726756IPR000967Zinc finger, NF-X1-type
PfamPF014220.17726741IPR000967Zinc finger, NF-X1-type
CDDcd060082.39E-5754803No hitNo description
PfamPF014220.17758784IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028765786IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.2E-510021059IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1201 aa     Download sequence    Send to blast
MSSQIRRERR EWSRVPPQGA TRQEWVPRGA AAAAASTNVA QPSNLHSNNN ADAGSSNLGV  60
AVAAPSVSRS RSNNHGNDVG SSNQGVAVAA LPVSRGRSNN HGNDAGFSNQ GVAVAALPVS  120
HGRSNNHGND AGPSNQGVAV ASPPVSHGRS NNPGNGAGSS NQGLAVAAPP VNRGRSKNHG  180
KDSVSSNQGV AVAALGSRGR SNNHGSHWME MEKDKGSRSG SQVEKGLRVG VRDSSLPQLV  240
QEIQEKLMKG TVECMICYEM VQRSVPVWSC SSCYSIFHLN CIKKWARAPI SSDLSLSVEK  300
NHELNWRCPG CQSVKFTSSK EIRYVCFCGK RIDPPSDLYL TPHSCGEPCG KPLQREVLVP  360
GGNRDDLCPH ACVLQCHPGP CPPCKAFAPP RLCPCGKKNI TTRCSDRQSV LTCGQCCGKL  420
LECGRHRCER ICHVGSCDPC KVPSSATCFC SKNMEVVLCG DMTVKGEIEA KGSCVECELL  480
PSRVKTCCCG KTRLENERQS CLDPIPTCSK VCGKLLHCGM HSCKEACHVG ECPPCLVEVS  540
QKCCCGSTSR TVECYKTMME NEKFMCEKSC GIKKNCGRHR CSERCCPFSN SNHYNTFSGD  600
WVPHFCSMPC GKKLRCGQHV CECLCHSGHC PPCFQTIFNE LACACGRTSI PPPLPCGTPP  660
PSCQLPCSVP QPCGHSVSHS CHFGDCPPCS VPVAKECIGG HVVLRNIPCG SKDIRCNHPC  720
GKTRQCGLHA CGRTCHPPPC DNLSGVVQGF KAPCGQTCGA PRRSCRHTCM APCHPSSPCP  780
DIRCEFPVTI TCSCGRITAN VPCDVGGSSS NYNADAIHEA SIIQTLPVPL QPVDANGKKV  840
PLGQRKLICD DECSKLERKR VLADAFDITA PNLDSLHFGD NSLSSELLLD FFRREPKWVL  900
AVEERCKILV LGKTRGTGTT HGLKVHIFCP MLKEKRDAVR LIADRWKLAI TAAGWEPKRF  960
IVISVTPKSK APARVIGVKG TTTLNVPLPP VFDPLVDMDL RLVVSFPDLP RDTEINSLVL  1020
RFGGECELVW LNDKNALAVF HDPARAATAM RRLDYATVYQ GAVLVAPNAG ALVASSATNA  1080
WGGAGAMKGG GALPALKGNS WKKAVAQDSG WEDSWGGEEW IAGSVNIQPS VWKKEAPLAA  1140
SLNRWNVLEQ ESSSSLSSTT VRAEVSGKKT ENAGEEGGSK EEEKLDAASE VVDDWEKAYE  1200
*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G104700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583471.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_014633398.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A0R0J2M40.0A0A0R0J2M4_SOYBN; Uncharacterized protein
STRINGGLYMA07G11834.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1