PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G104700.1.p
Common NameGLYMA_07G104700, LOC100789059
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-X1
Protein Properties Length: 1228aa    MW: 131553 Da    PI: 8.1125
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G104700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X123.41.3e-07423441119
             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                          CG+H+C+++CH G C+pC+
  Glyma.07G104700.1.p 423 CGRHRCERICHVGSCDPCK 441
                          ******************8 PP
2zf-NF-X116.91.4e-05487504118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H C+++CH+G C +C
  Glyma.07G104700.1.p 487 CGNHVCSEICHPGSCVEC 504
                          ***************999 PP
3zf-NF-X122.23.1e-07545562118
             zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                          CG+H+C++ CH G+CppC
  Glyma.07G104700.1.p 545 CGMHSCKEACHVGECPPC 562
                          ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.94E-6244315No hitNo description
PROSITE profilePS500168.698251314IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590254311IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.509254312IPR001841Zinc finger, RING-type
CDDcd060086.51E-6345406No hitNo description
SMARTSM004380.05368386IPR000967Zinc finger, NF-X1-type
PfamPF014224.1370385IPR000967Zinc finger, NF-X1-type
CDDcd060089.71E-12413461No hitNo description
SMARTSM004384.0E-5423442IPR000967Zinc finger, NF-X1-type
PfamPF014225.7E-6423441IPR000967Zinc finger, NF-X1-type
CDDcd060082.31E-6477522No hitNo description
SMARTSM004386.9E-4487506IPR000967Zinc finger, NF-X1-type
PfamPF014220.005487504IPR000967Zinc finger, NF-X1-type
CDDcd060083.39E-12535583No hitNo description
SMARTSM004383.5E-5545564IPR000967Zinc finger, NF-X1-type
PfamPF014221.7E-5545562IPR000967Zinc finger, NF-X1-type
PfamPF0142220603614IPR000967Zinc finger, NF-X1-type
CDDcd060086.25E-8633676No hitNo description
SMARTSM004380.083643662IPR000967Zinc finger, NF-X1-type
PfamPF014220.74643660IPR000967Zinc finger, NF-X1-type
CDDcd060086.04E-6690738No hitNo description
SMARTSM004380.0043700718IPR000967Zinc finger, NF-X1-type
PfamPF014227700717IPR000967Zinc finger, NF-X1-type
CDDcd060081.41E-4743801No hitNo description
SMARTSM004383.8753783IPR000967Zinc finger, NF-X1-type
PfamPF014220.13753768IPR000967Zinc finger, NF-X1-type
CDDcd060083.53E-5781830No hitNo description
PfamPF014220.21785811IPR000967Zinc finger, NF-X1-type
SMARTSM004380.028792813IPR000967Zinc finger, NF-X1-type
Gene3DG3DSA:3.30.70.3302.2E-510291086IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1228 aa     Download sequence    Send to blast
MSSQIRRERR EWSRVPPQGA TRQEWVPRGA AAAAASTNVA QPSNLHSNNN ADAGSSNLGV  60
AVAAPSVSRS RSNNHGNDVG SSNQGVAVAA LPVSRGRSNN HGNDAGFSNQ GVAVAALPVS  120
HGRSNNHGND AGPSNQGVAV ASPPVSHGRS NNPGNGAGSS NQGLAVAAPP VNRGRSKNHG  180
KDSVSSNQGV AVAALGSRGR SNNHGSHWME MEKDKGSRSG SQVEKGLRVG VRDSSLPQLV  240
QEIQEKLMKG TVECMICYEM VQRSVPVWSC SSCYSIFHLN CIKKWARAPI SSDLSLSVEK  300
NHELNWRCPG CQSVKFTSSK EIRYVCFCGK RIDPPSDLYL TPHSCGEPCG KPLQREVLVP  360
GGNRDDLCPH ACVLQCHPGP CPPCKAFAPP RLCPCGKKNI TTRCSDRQSV LTCGQCCGKL  420
LECGRHRCER ICHVGSCDPC KVPSSATCFC SKNMEVVLCG DMTVKGEIEA KGGVFSCSSY  480
CLKILGCGNH VCSEICHPGS CVECELLPSR VKTCCCGKTR LENERQSCLD PIPTCSKVCG  540
KLLHCGMHSC KEACHVGECP PCLVEVSQKC CCGSTSRTVE CYKTMMENEK FMCEKSCGIK  600
KNCGRHRCSE RCCPFSNSNH YNTFSGDWVP HFCSMPCGKK LRCGQHVCEC LCHSGHCPPC  660
FQTIFNELAC ACGRTSIPPP LPCGTPPPSC QLPCSVPQPC GHSVSHSCHF GDCPPCSVPV  720
AKECIGGHVV LRNIPCGSKD IRCNHPCGKT RQCGLHACGR TCHPPPCDNL SGVVQGFKAP  780
CGQTCGAPRR SCRHTCMAPC HPSSPCPDIR CEFPVTITCS CGRITANVPC DVGGSSSNYN  840
ADAIHEASII QTLPVPLQPV DANGKKVPLG QRKLICDDEC SKLERKRVLA DAFDITAPNL  900
DSLHFGDNSL SSELLLDFFR REPKWVLAVE ERCKILVLGK TRGTGTTHGL KVHIFCPMLK  960
EKRDAVRLIA DRWKLAITAA GWEPKRFIVI SVTPKSKAPA RVIGVKGTTT LNVPLPPVFD  1020
PLVDMDLRLV VSFPDLPRDT EINSLVLRFG GECELVWLND KNALAVFHDP ARAATAMRRL  1080
DYATVYQGAV LVAPNAGALV ASSATNAWGG AGAMKGGGAL PALKGNSWKK AVAQDSGWED  1140
SWGGEEWIAG SVNIQPSVWK KEAPLAASLN RWNVLEQESS SSLSSTTVRA EVSGKKTENA  1200
GEEGGSKEEE KLDAASEVVD DWEKAYE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G104700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583471.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_014633398.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLK7L0W70.0K7L0W7_SOYBN; Uncharacterized protein
STRINGGLYMA07G11834.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69723145
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1