PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G100700.2.p | ||||||||
Common Name | GLYMA_07G100700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 941aa MW: 105389 Da PI: 5.4842 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.3 | 8.7e-09 | 433 | 477 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g+WT eEd+ l+ v+ G ++W Ia +g+ Rt+ qc r+q Glyma.07G100700.2.p 433 GAWTNEEDKSLLLIVQDIGIRNWFDIATSLGTSRTPFQCLARFQR 477 79***************************************9995 PP | |||||||
2 | Myb_DNA-binding | 41.2 | 3.8e-13 | 487 | 529 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd +l av+ +G ++W ++a+ + +Rt+ qc +rw k Glyma.07G100700.2.p 487 EWTEEEDSQLCSAVASFGARDWQSVASVLE-RRTGTQCSNRWKK 529 7*****************************.***********98 PP | |||||||
3 | Myb_DNA-binding | 37.8 | 4.6e-12 | 536 | 580 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g++T eEd ++ av ++G + W+ Ia++++ gR qc++r+++ Glyma.07G100700.2.p 536 KGSFTREEDIRITVAVMLFGRK-WNQIANYVP-GRIQSQCRDRYLNC 580 799*****************99.*********.***********996 PP | |||||||
4 | Myb_DNA-binding | 48.9 | 1.5e-15 | 589 | 630 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 WT+eEd++l av ++G W++Ia++++ Rt+ qc+ rw Glyma.07G100700.2.p 589 GWTEEEDLRLEAAVVKHGYC-WSKIAEEVP-PRTDSQCRKRWKV 630 5*****************99.*********.9**********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.959 | 328 | 424 | IPR017877 | Myb-like domain |
SMART | SM00717 | 5.2E-4 | 332 | 428 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 335 | 351 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00385 | 389 | 424 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 399 | 438 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.06E-16 | 408 | 476 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 9.489 | 427 | 479 | IPR017877 | Myb-like domain |
SMART | SM00717 | 1.0E-7 | 431 | 481 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.66E-6 | 434 | 479 | No hit | No description |
Pfam | PF13921 | 2.0E-14 | 435 | 496 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-13 | 439 | 490 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.315 | 480 | 535 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.02E-21 | 483 | 577 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.6E-10 | 484 | 533 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.16E-11 | 487 | 531 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.9E-17 | 491 | 542 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.6E-11 | 535 | 583 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.249 | 536 | 581 | IPR017930 | Myb domain |
Pfam | PF00249 | 3.5E-11 | 536 | 580 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.23E-6 | 538 | 579 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-17 | 543 | 588 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.86E-23 | 561 | 633 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.53 | 582 | 636 | IPR017930 | Myb domain |
SMART | SM00717 | 2.6E-13 | 586 | 634 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.3E-17 | 589 | 631 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-14 | 589 | 630 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.98E-13 | 590 | 631 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 941 aa Download sequence Send to blast |
MTPRADDFEK DNLSATDDDD DDDDGLKEDM DALARACMIA VPRPDDNSTA EDDIPAEDPL 60 LLAGDSIVPA ATDDDDDQDD LECLKRVQSL YQPLSILPPL TPPAAGSDDD DVDDLETVRA 120 IMKRFSTYDE GSHEGGMEML VEGDQTSSPG YEGDIANDSI YYESDVGELC PVSQHTNEAA 180 TKELIQNVEM KLSDFVESSE PDACGSSKLP QKRLSCPPVV RFFIDAINKN RDLQRFIRSK 240 LIEFEAKIEE NKKMRNKIKI LKDFQASCTR RTGNVLSLKK DPRVQLISSK KSFAPKNSKK 300 PKKASAMCYG PEENSHVANY RMVLERFPLS LDRKKWSNVE RESLLKGIKQ QFQEMVLQLS 360 LSVDSSEGLP GDANGMDDVI ASVKDLAITP ERIRQFLPKV NWNLIASMYV GGRTGAECES 420 RWLNCEDPLI NQGAWTNEED KSLLLIVQDI GIRNWFDIAT SLGTSRTPFQ CLARFQRSLN 480 PSMLNSEWTE EEDSQLCSAV ASFGARDWQS VASVLERRTG TQCSNRWKKS LCPEKKGSFT 540 REEDIRITVA VMLFGRKWNQ IANYVPGRIQ SQCRDRYLNC LDPSLKWGGW TEEEDLRLEA 600 AVVKHGYCWS KIAEEVPPRT DSQCRKRWKV LCPEYVPLLQ EARKKQRSII GCNFVDRESE 660 RPAITLNDFL PLPVPAPKSD VGASNLRKKA KSSNVPKKMS KKLAKRARLH TKEVQDTEVY 720 SDDGIKTYGE VSACSNVPKK MRSKRHTKKT RNCPKEVVDI YCSEKVKTCI ESSESQSTCI 780 ASSGNQDSDN ITIACFLRDK SKEMLSRFTK DLSQASFSSR SIDVSNKQQN VASDRRVGKP 840 EDANTLTGGD HEEMTLACFL GNKSKKGSQA ANGRGACSST IIIPDDSGLS MSKHVEKETV 900 LHGGVAEPMD IVVEEKDDEL LTSFLQNRPT RQRKRPSRFL * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 3e-29 | 401 | 628 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 3e-29 | 401 | 628 | 7 | 155 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 685 | 691 | LRKKAKS |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18955 | 0.0 | hypocotyl| leaf |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G100700.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015044 | 1e-137 | AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028239919.1 | 0.0 | uncharacterized protein LOC114418658 isoform X2 | ||||
TrEMBL | K7L0S8 | 0.0 | K7L0S8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G11330.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18100.1 | 1e-166 | myb domain protein 4r1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G100700.2.p |