PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.07G092000.1.p

Common Name

GLYMA_07G092000, LOC100787111

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

NAC

Protein Properties

Length: 325aa MW: 36387.3 Da PI: 8.1215

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.07G092000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	178.7	1.6e-55	5	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeel+++yL++kv++++++ ++i+ vd++k+ePwdLp k++ ++kewyfFs rd+ky+tg r+nrat+sgyWk+tgkdk Glyma.07G092000.1.p 5 LPPGFRFHPTDEELITCYLTRKVSDSSFTS-KAIAVVDLNKCEPWDLPGKASMGKKEWYFFSLRDRKYPTGLRTNRATESGYWKTTGKDK 93 79***********************999.88***********9888999******************************* PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 e+++ g lvg+kktLvfy+grap+gek++Wvmheyrle Glyma.07G092000.1.p 94 EIFR-AGVLVGMKKTLVFYRGRAPRGEKSNWVMHEYRLE 131 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.92E-64	3	151	IPR003441	NAC domain
PROSITE profile	PS51005	59.765	5	151	IPR003441	NAC domain
Pfam	PF02365	6.6E-29	6	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence Send to blast
MEENLPPGFR FHPTDEELIT CYLTRKVSDS SFTSKAIAVV DLNKCEPWDL PGKASMGKKE 60 WYFFSLRDRK YPTGLRTNRA TESGYWKTTG KDKEIFRAGV LVGMKKTLVF YRGRAPRGEK 120 SNWVMHEYRL ENKHHFGPSK DEWVVCRVFQ KSLQVKRPQQ TPSSQPESPC DTASMVNEFG 180 DVELPNLINN IANSSGGLTN NISGQTCFNA DLINSVNTNM NLAMNWPVAS EVIQVPTLPS 240 LPWPSGLLNP SISVNSLLLK ALQLRSYQQR EAATDHLIAS YVPQGVSHVG TDLSSNLTAS 300 SSKVLECMPQ QQQLEQPFNL DSIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	4	151	16	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	4	151	19	168	NAC domain-containing protein 19
3swm_B	1e-56	4	151	19	168	NAC domain-containing protein 19
3swm_C	1e-56	4	151	19	168	NAC domain-containing protein 19
3swm_D	1e-56	4	151	19	168	NAC domain-containing protein 19
3swp_A	1e-56	4	151	19	168	NAC domain-containing protein 19
3swp_B	1e-56	4	151	19	168	NAC domain-containing protein 19
3swp_C	1e-56	4	151	19	168	NAC domain-containing protein 19
3swp_D	1e-56	4	151	19	168	NAC domain-containing protein 19
4dul_A	1e-56	4	151	16	165	NAC domain-containing protein 19
4dul_B	1e-56	4	151	16	165	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.20222	0.0	root

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.07G092000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006583410.1	0.0	NAC domain-containing protein 92
TrEMBL	I1KIX5	0.0	I1KIX5_SOYBN; Uncharacterized protein
STRING	GLYMA07G10240.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4946	33	56
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-115	NAC domain containing protein 58

Link Out ? help Back to Top
Phytozome	Glyma.07G092000.1.p
Entrez Gene	100787111