PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G087900.2.p
Common NameGLYMA_07G087900, LOC100778031
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 361aa    MW: 40986.6 Da    PI: 4.2578
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G087900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.35.3e-15124209186
             trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                          +W ++e+ +L+e+  ++  +l+r++l+   W ev++k+ +e + er+ +qC++ +++l++rykk+k+++ +     s ++ +f++++
  Glyma.07G087900.2.p 124 EWNESETFVLLEVWGDKFLQLGRNSLRSEEWHEVAEKVsEELKTERTVTQCRSVFDKLKRRYKKEKARMDEM-GLGSCKWTFFKKMD 209
                          5*************************************88899***************************96.88889********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.2E-19123211No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MDDMEDDARY PPKSFSLNRQ NPSHRHKHPI RAAPYHRPMP TRYQEPDDDD DDDNEPDDFD  60
DGEAENGYDD DNNVAYPRIP KKRKVVAAAA AAAAGGSYEF APRVKFSYGS RGSGSGSGSG  120
SGEEWNESET FVLLEVWGDK FLQLGRNSLR SEEWHEVAEK VSEELKTERT VTQCRSVFDK  180
LKRRYKKEKA RMDEMGLGSC KWTFFKKMDM LMASSARQEY GLACGVDSGE YVFMNTRVYL  240
NSSNGFDEMR DSPGESESDD DDDEEEDVGG GGGDEDEDED DEMSCRVLAD SIQKFGKIYE  300
KIENSKRQQM MELEKMRLDF NRELELQKKQ ILERAQAEIA KIQDVDEEDT DTSGGENLSE  360
*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1178183DKLKRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.538450.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G087900.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530001.10.0trihelix transcription factor ASIL2
RefseqXP_028239799.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A445JUC70.0A0A445JUC7_GLYSO; Trihelix transcription factor ASIL2 isoform A
TrEMBLI1KIS60.0I1KIS6_SOYBN; Uncharacterized protein
STRINGGLYMA07G09690.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.15e-89Trihelix family protein