PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G085300.4.p
Common NameGLYMA_07G085300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 544aa    MW: 60131.4 Da    PI: 8.7981
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G085300.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR461.1e-1474113242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Glyma.07G085300.4.p  74 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 113
                          89**************************.********9875 PP
2TCR512.8e-16158197140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.07G085300.4.p 158 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 197
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1773113IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.13874198IPR005172CRC domain
PfamPF036382.7E-1175110IPR005172CRC domain
SMARTSM011148.4E-20158199IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.0E-12161196IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MHRCRKLLLR RQRRWKFRRR SWRGSLILPA RRSIHHSYRW LCCRCRCRRH LRGLESPKSR  60
SRPNFEMKDA TPKKQKQCNC KHSKCLKLYC ECFASGIYCD GCNCVNCFNN VENEAARREA  120
VEATLERNPN AFRPKIASSP HGTRDSREDA GEVLILGKHN KGCHCKKSGC LKKYCECFQA  180
NILCSENCKC MDCKNFEGSE ERQALFHGDQ NNMAYIQQAA NAAITGAIGS SGYSSPPVSK  240
KRKGQELFFW PTTKDPSISK LGQQVNHVRG PAPSSSLSPV SGARVGTATL GPSKFMYRSL  300
LADIIQPQHL KELCSVLVLV SGQAAKTLTD QKILMEKQAE DQTETSLASS SQEQLPSQKE  360
GHIEKTVADD CSSANQTDKI SPDNSSSDGA DVPKGRPMSP GTLALMCDEQ DTMFMTTASP  420
IAPMAHACNT SSQFPYGQGM TEVYPEQERI VLTKFRDFLN RVITMGEINE TKCSSLTRNE  480
LESQKDPIIN GIGNASSEIV LQQGATSNGV TKPGSPLVTT STSMIPGNIA ENGETKVKIE  540
KEI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-32662072132Protein lin-54 homolog
5fd3_B2e-32662072132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815LRRQRRWK
21118QRRWKFRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.451860.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G085300.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-179AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006587520.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0R0J1T50.0A0A0R0J1T5_SOYBN; Uncharacterized protein
STRINGGLYMA07G09380.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-173Tesmin/TSO1-like CXC domain-containing protein