PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G085300.3.p
Common NameGLYMA_07G085300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CPP
Protein Properties Length: 500aa    MW: 54085.3 Da    PI: 7.7416
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G085300.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR46.19.5e-1590129242
                  TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                          ++k+CnCk+skClk+YCeCfa+g +C+  C+C +C+N+ e+
  Glyma.07G085300.3.p  90 KQKQCNCKHSKCLKLYCECFASGIYCDG-CNCVNCFNNVEN 129
                          89**************************.********9875 PP
2TCR51.22.5e-16174213140
                  TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                          k++kgC+Ckks ClkkYCeCf+a+  Cse+CkC dCkN e
  Glyma.07G085300.3.p 174 KHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFE 213
                          589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.2E-1789129IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163437.13890214IPR005172CRC domain
PfamPF036382.4E-1191126IPR005172CRC domain
SMARTSM011148.4E-20174215IPR033467Tesmin/TSO1-like CXC domain
PfamPF036389.2E-13177212IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGEGEGGGDC VQKNASLSEV VAPSAASLEV PAKKLARQLD FTGAPEHPPQ LPVAVLPLPL  60
QAPPARVGKP ESPKSRSRPN FEMKDATPKK QKQCNCKHSK CLKLYCECFA SGIYCDGCNC  120
VNCFNNVENE AARREAVEAT LERNPNAFRP KIASSPHGTR DSREDAGEVL ILGKHNKGCH  180
CKKSGCLKKY CECFQANILC SENCKCMDCK NFEGSEERQA LFHGDQNNMA YIQQAANAAI  240
TGAIGSSGYS SPPVSKKRKG QELFFWPTTK DPSISKLGQQ AHQVNHVRGP APSSSLSPVS  300
GARVGTATLG PSKFMYRSLL ADIIQPQHLK ELCSVLVLVS GQAAKTLTDQ KILMEKQAED  360
QTETSLASSS QEQLPSQKEG HIEKTVADDC SSANQTDKIS PDNSSSDGAD VPKGRPMSPG  420
TLALMCDEQD TMFMTTASPI APMAHACNTS SQFPYGQGMT EVYPEQERIV LTKFRDFLNR  480
VITMGEINGK NKVFFVDQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-32822232132Protein lin-54 homolog
5fd3_B1e-32822232132Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.451860.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G085300.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583383.10.0protein tesmin/TSO1-like CXC 5 isoform X2
RefseqXP_028239775.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD10.0TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A0R0J7490.0A0A0R0J749_SOYBN; Uncharacterized protein
STRINGGLYMA07G09380.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-168Tesmin/TSO1-like CXC domain-containing protein