PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G083500.3.p | ||||||||
Common Name | GLYMA_07G083500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27180.5 Da PI: 7.3712 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.8 | 0.00046 | 116 | 154 | 12 | 55 |
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Glyma.07G083500.3.p 116 RKEKLGERITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 154 5667778888888888887.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.28 | 104 | 153 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.62E-10 | 114 | 164 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.26E-6 | 114 | 158 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 2.8E-7 | 114 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001046 | Molecular Function | core promoter sequence-specific DNA binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MGQFIQTKKL ESWEDQMLGQ APNASLVDVK QENLVNSYAY GHGSEELQSS KPSWSPKSCV 60 TTSFSSNMLD FSNNKTDARH PPPDLSSECN STAAGGALKK ARVQPSATTQ TTFKVRKEKL 120 GERITALHQL VSPFGKTDTA SVLLEAIGYI RFLQSQIEAL SLPYLSGGSG NTRQQHSVQG 180 EKTCIFPEDP GQLLDENCLK RKAAGEPDTQ EEPKKGLRSR GLCLVPVSCT LQVGSDNGAD 240 YWAPALGGGF R* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32075 | 0.0 | cotyledon| epicotyl| hypocotyl| leaf| meristem| root| somatic embryo| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G083500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093872 | 0.0 | BT093872.1 Soybean clone JCVI-FLGm-24O24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240881.1 | 0.0 | uncharacterized protein LOC100786555 | ||||
Swissprot | Q8S3D1 | 1e-89 | BH068_ARATH; Transcription factor bHLH68 | ||||
TrEMBL | I1KIN1 | 0.0 | I1KIN1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G09180.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29100.1 | 5e-92 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G083500.3.p |
Publications ? help Back to Top | |||
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