PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G076800.2.p
Common NameGLYMA_07G076800, LOC100811873
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 829aa    MW: 90401.3 Da    PI: 6.3365
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G076800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.48e-21129184156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +++ +++t++q++eLe+lF+++++p++++r eL+++l L++rqVk+WFqNrR+++k
  Glyma.07G076800.2.p 129 KKRYHRHTPQQIQELEALFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMK 184
                          688999***********************************************999 PP
2START209.61.2e-653355591206
                          HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          ela++a++elvk a+ +ep+W++ +    e++n++e++++f++  +     + +ea+r+ g+v+ ++  lve+l+d++ +W e+++    
  Glyma.07G076800.2.p 335 ELALAAMDELVKIAQTGEPLWMRNVeggrEILNNEEYVRTFTPCIGlrpngFVSEASRENGMVIINSLALVETLMDSN-RWAEMFPciia 423
                          5899**************************************9999********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160
                          + +t+evissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+ds ++ +  + +v +++lpSg+++++++ng
  Glyma.07G076800.2.p 424 RTSTTEVISSGingtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDSIRESSGAPTFVNCRRLPSGCVVQDMPNG 513
                          *****************************************************************999********************** PP

                          EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          +skvtwveh++++++++h+l+r+l++sg+ +ga++wvatlqrqce+
  Glyma.07G076800.2.p 514 YSKVTWVEHAEYDESQVHQLYRPLLSSGMGFGAQRWVATLQRQCEC 559
                          ********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-20112186IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-21116186IPR009057Homeodomain-like
PROSITE profilePS5007117.216126186IPR001356Homeobox domain
SMARTSM003891.7E-17127190IPR001356Homeobox domain
CDDcd000862.06E-18128186No hitNo description
PfamPF000462.2E-18129184IPR001356Homeobox domain
PROSITE patternPS000270161184IPR017970Homeobox, conserved site
PROSITE profilePS5084844.598326562IPR002913START domain
SuperFamilySSF559611.17E-32328559No hitNo description
CDDcd088756.78E-126330558No hitNo description
PfamPF018521.9E-57335559IPR002913START domain
SMARTSM002341.2E-49335559IPR002913START domain
SuperFamilySSF559615.13E-23585821No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 829 aa     Download sequence    Send to blast
MSFGGLLDNK SGSGGARNNV SDIPYNNNNV TNTTTTNNDR MPFGAISQPR LVTTTPTLAK  60
SMFNSSGLSL ALQTNIDGQE DVNRMAENTS EPNGLRRSRE DEHESRSGSD NMDGASGDEH  120
DAADNPPRKK RYHRHTPQQI QELEALFKEC PHPDEKQRLE LSRRLCLETR QVKFWFQNRR  180
TQMKTQLERH ENTLLRQEND KLRAENMSIR DAMRNPMCSN CGGPAIIGEI SLEEQHLRIE  240
NARLKDELDR VCVLAGKFLG RPVSSLPSSS LELGMRGNGF AGIPAATTLP LGQDFDMGMS  300
VSMNNNALAM VSPPTSARAA AAGFDRSVER SMFLELALAA MDELVKIAQT GEPLWMRNVE  360
GGREILNNEE YVRTFTPCIG LRPNGFVSEA SRENGMVIIN SLALVETLMD SNRWAEMFPC  420
IIARTSTTEV ISSGINGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ HAEGVWAVVD  480
VSIDSIRESS GAPTFVNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESQV HQLYRPLLSS  540
GMGFGAQRWV ATLQRQCECL AILMSSAAPS RDHSAITAGG RRSMMKLAQR MTNNFCAGVC  600
ASTVHKWNKL NAGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP HRLFDFLRDE  660
RLRSEWDILS NGGPMQEMAH IAKGQDHGNA VSLLRASAIN SNQSSMLILQ ETCIDAAGSL  720
VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPGSR GPPNGPTSTT NGGDNGVTRV  780
SGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALHCES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.92750.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G076800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006583340.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLI1KIH00.0I1KIH0_SOYBN; Uncharacterized protein
STRINGGLYMA07G08340.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]