PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G054000.1.p
Common NameGLYMA_07G054000, LOC100803345
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 291aa    MW: 32807.7 Da    PI: 7.9038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G054000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.1e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT+ Ed ll ++++ +G g+Wk+ +++ g+ R++k+c++rw +yl
  Glyma.07G054000.1.p 14 KGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61
                         79******************************99************97 PP
2Myb_DNA-binding543.8e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T+eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l
  Glyma.07G054000.1.p  67 RGNITPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                          7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.536961IPR017930Myb domain
SuperFamilySSF466892.05E-3011108IPR009057Homeodomain-like
SMARTSM007175.2E-131363IPR001005SANT/Myb domain
PfamPF002495.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-251568IPR009057Homeodomain-like
CDDcd001672.80E-101661No hitNo description
PROSITE profilePS5129427.35762116IPR017930Myb domain
SMARTSM007177.9E-1766114IPR001005SANT/Myb domain
PfamPF002491.7E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-2769116IPR009057Homeodomain-like
CDDcd001678.35E-1371112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGRAPCCSKV GLHKGPWTPK EDALLTKYIQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPEEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLKIQG  120
TEDTDTHNML ENPQEEPASD GGNNNKKKKK NGGKKKNKGK DNAEPPKTQV YLPKPIRVKA  180
MYLQRTDSNT FTFDSNSNSA SGSTSQEKDE SPVTKESNVV SEVGNVGEES DGFGFFSEDH  240
DLVNASDIEC QSYFPTYHGT LQQLYEEYFQ LLNMDQGQFE RNSFAESLLE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-271211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145155KKKKKNGGKKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.396100.0hypocotyl| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G054000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0963970.0BT096397.1 Soybean clone JCVI-FLGm-20P11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528784.10.0transcription factor MYB4
RefseqXP_028239371.10.0transcription factor MYB4-like
TrEMBLA0A445JSS20.0A0A445JSS2_GLYSO; Transcription factor MYB3
TrEMBLI1KHT70.0I1KHT7_SOYBN; Uncharacterized protein
STRINGGLYMA07G05960.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.12e-67myb domain protein 111