PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G048500.2.p | ||||||||
Common Name | GLYMA_07G048500, LOC100101859 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 751aa MW: 82316.4 Da PI: 6.5537 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.6 | 2.2e-16 | 24 | 68 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE+ ++++a k++G W +I +++g ++t+ q++s+ qk+ Glyma.07G048500.2.p 24 RERWTEEEHNRFLEALKLHGRA-WQRIEEHIG-TKTAVQIRSHAQKF 68 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.12E-16 | 18 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 20.226 | 19 | 73 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 9.7E-16 | 22 | 71 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 1.3E-12 | 23 | 71 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-8 | 23 | 64 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.8E-13 | 24 | 67 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.46E-9 | 26 | 69 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 751 aa Download sequence Send to blast |
MDAYSSGEEV VVKTRKPYTI TKQRERWTEE EHNRFLEALK LHGRAWQRIE EHIGTKTAVQ 60 IRSHAQKFFT KLEKEALVKG VPIGKALDID IPPPRPKRKP NNPYPRKTRI GSASLHSGAK 120 DGKLNLVESS HVNQALNLEK EPLPEKHDLD EGITTVKENK DENRGAVFTL LQEVPCSSVS 180 SANKSSITMS VPLGNPCAFK EITPSVKEVI PRDEKTESFV TIELENGTLE INDRKQTNGT 240 SKDSTLENSD ALHMKLVQNE KTDGLDCALT IDGMQGNQNY PRHVTVHVVD GNLGTNTQNP 300 SQDMLFRDSM FQPIGGVNGQ QNVFTNSAPS NTSESQNNTV RSSVHQSFLP YPPFTQHNQD 360 DCQSFFHMSS TFSNLIISTL MQNPAAHAAA SFAATFWPYA NPETSANSPR CSQGGFTNRQ 420 IGSPPSVAAI AAATVAAATA WWAAHGLLPL CAPLHTSFAC SPASVTAVPS MNTGEAPALK 480 AEQEKTTLQN PPLQDQMLDP EYSEAQQAQH SASKSPAAIL SDSESGDAKL NTSSKATDHE 540 TNKTIPEHLD SNKTKGRKPV DRSSCGSHTA SSSDVETDAL EKGEKGKEEP ETPDANQLAI 600 DFSNRRRSVS NLTDSWKEVS EEGRLAFQAL FSREVLPQSF SPPHALKNKN QQMDNANNNK 660 QNIDDKDEDP DSKKCSSNYE AMQKNLPFVE NNEGLLTIGL GQGKLKTRRT GFKPYKRCSM 720 EAKENRVGAS NNQGEEQGCK RIRLEGETST * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.17697 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| leaf| pod| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G048500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU076433 | 0.0 | EU076433.1 Glycine max late elongated hypocotyl and circadian clock associated-1-like protein 1 (LCL1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001345919.1 | 0.0 | LHY1/CCA1-like protein | ||||
Refseq | XP_006583199.1 | 0.0 | LHY1/CCA1-like protein isoform X1 | ||||
Refseq | XP_006583200.1 | 0.0 | LHY1/CCA1-like protein isoform X1 | ||||
Refseq | XP_006583201.1 | 0.0 | LHY1/CCA1-like protein isoform X1 | ||||
Refseq | XP_006583202.1 | 0.0 | LHY1/CCA1-like protein isoform X1 | ||||
Refseq | XP_014633207.1 | 0.0 | LHY1/CCA1-like protein isoform X1 | ||||
TrEMBL | K7KZP5 | 0.0 | K7KZP5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G05410.6 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01060.3 | 1e-134 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G048500.2.p |
Entrez Gene | 100101859 |