PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G048200.1.p | ||||||||
Common Name | GLYMA_07G048200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | B3 | ||||||||
Protein Properties | Length: 501aa MW: 56285.6 Da PI: 7.1201 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 95.8 | 2.9e-30 | 140 | 234 | 1 | 89 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld. 85 f+kv tpsdv+k++rlv+pk++ae++ ++ +e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ Glyma.07G048200.1.p 140 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSANEKGLLLNFEDRNGKLWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDMVSFQRGv 229 89***************************966667889*************************************************543 PP SS.SE CS B3 86 gr.se 89 g+ + Glyma.07G048200.1.p 230 GElYR 234 54444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-40 | 129 | 231 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.19E-29 | 136 | 228 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.21E-26 | 138 | 227 | No hit | No description |
SMART | SM01019 | 3.7E-21 | 140 | 241 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 14.001 | 140 | 240 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.2E-27 | 140 | 243 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 501 aa Download sequence Send to blast |
MELMQEVKGY SDGREEEEEE EEAAEEIITR EESSKSHNSS SGLGLLHQHQ EAAGSNFIIN 60 NNHHHHQHHH HHTTKQLDFM DLSLGSSKDE GNLQGSSSSV YAHHHHAASA SSSANGNNNN 120 SSSSNLQQQQ QQPAEKEHMF DKVVTPSDVG KLNRLVIPKQ HAEKYFPLDS SANEKGLLLN 180 FEDRNGKLWR FRYSYWNSSQ SYVMTKGWSR FVKEKKLDAG DMVSFQRGVG ELYRHRLYID 240 WWRRPDHHHH HHHGPDHSTT LFTPFLIPNQ PHHLMSIRWG ATGRLYSLPS PTPPRHHEHL 300 NYNNNAMYHP FHHHGAGSGI NATTHHYNNY HEMSSTTTSG SAGSVFYHRS TPPISMPLAD 360 HQTLNTRQQQ QQQQQQEGAG NVSLSPMIID SVPVAHHLHH QQHHGGKSSG PSSTSTSPST 420 AGKRLRLFGV NMECASSTSE DPKCFSLLSS SSMANSNSQP PLQLLREDTL SSSSARFGDQ 480 RGVGEPSMLF DLDPSLQYRQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-62 | 134 | 245 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-62 | 134 | 245 | 2 | 114 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59300 | 0.0 | cotyledon| flower |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G048200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235293 | 0.0 | AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529866.2 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Refseq | XP_006583192.1 | 0.0 | B3 domain-containing protein Os03g0120900 | ||||
Refseq | XP_028239294.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
Refseq | XP_028239295.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
Refseq | XP_028239296.1 | 0.0 | B3 domain-containing protein Os03g0120900-like | ||||
TrEMBL | A0A0R0J5H3 | 0.0 | A0A0R0J5H3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G05381.3 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2338 | 33 | 82 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 2e-64 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G048200.1.p |