PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G045200.1.p | ||||||||
Common Name | GLYMA_07G045200, LOC100818284 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 256aa MW: 28746.2 Da PI: 10.0749 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 62.2 | 5.7e-20 | 24 | 70 | 2 | 48 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 ++e +r+vtfskR+ g++ K ELSvLC++e+avii s++gkly+ Glyma.07G045200.1.p 24 KVEQINRRYVTFSKRKLGLFNKLTELSVLCQVEAAVIITSQNGKLYT 70 5677889***************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.745 | 15 | 75 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.5E-22 | 15 | 74 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.76E-20 | 16 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-14 | 17 | 37 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.4E-18 | 25 | 70 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-14 | 37 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-14 | 52 | 73 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MASFGANTVT KPIKKRKRTI EIKKVEQINR RYVTFSKRKL GLFNKLTELS VLCQVEAAVI 60 ITSQNGKLYT CGYPDADAVV RRYLSGGLSR GLDSESKKRQ QDAIETLRPE YEATQNHLKE 120 EQKRLQEIKE TRKSSLCFPS WWNLPTEGMG LEDLEQFKTS LERLKFNLVG ALQEKQMNSV 180 PSMPNALMVP PMPSTVLPPV SHAAMVPPMM PPQFQNMPLL SVQRLSGNQV QDDYWRSAAI 240 ASNGFGSLKS YGYAT* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 13 | 18 | KKRKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G045200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529856.1 | 0.0 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | K7KZN4 | 0.0 | K7KZN4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G05061.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13227 | 10 | 27 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-21 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G045200.1.p |
Entrez Gene | 100818284 |