PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G045000.1.p
Common NameGLYMA_07G045000, LOC100817750
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 288aa    MW: 32051.2 Da    PI: 10.367
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G045000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.78.4e-202470248
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                         ++e   +r+vtfskR+ g++ K  ELS+LC++e+avii s++gkly+
  Glyma.07G045000.1.p 24 KVEQINRRHVTFSKRKLGLFNKLTELSILCQVEAAVIITSQNGKLYT 70
                         5677889***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.1E-221574IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.8011575IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-201692IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-141737IPR002100Transcription factor, MADS-box
PfamPF003193.2E-182570IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-143752IPR002100Transcription factor, MADS-box
PRINTSPR004044.8E-145273IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MASSGANTAT KPIKKRKRTI EIKKVEQINR RHVTFSKRKL GLFNKLTELS ILCQVEAAVI  60
ITSQNGKLYT CGYPDADAVV RRYLNGGLPR RLDSACKKRQ QDAIETLRLE YEATQNHLKE  120
EQKRLQEIKE TRKSSLRFPS WWNLPTEGMG LEDLEQFKTS LERLKFNLVG ALQEKQMNSV  180
PSMPHAAMLP PMSSTMVPPM PSTVVPPVPH AAMVPPMSST MVPPMPHAAM VPPMMPPQFQ  240
SMPLLSAQRL SGNQVQDDYW RSAAIASTSS TFASNGFGSL KSYGYTT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11318KKRKRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G045000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529855.10.0agamous-like MADS-box protein AGL62
RefseqXP_028240776.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A445JS950.0A0A445JS95_GLYSO; Agamous-like MADS-box protein AGL62
TrEMBLK7KZN20.0K7KZN2_SOYBN; Uncharacterized protein
STRINGGLYMA07G05031.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-22AGAMOUS-like 62