PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G037700.1.p
Common NameGLYMA_07G037700, LOC100101858
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 266aa    MW: 30415.1 Da    PI: 8.5992
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G037700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEde l ++v  +G g W ++a+  g++R++k+c+ rw++yl
  Glyma.07G037700.1.p 13 KGAWSREEDETLSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding47.34.9e-1566110147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Glyma.07G037700.1.p  66 RGHISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 110
                          5666899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.622864IPR017930Myb domain
SuperFamilySSF466891.65E-2911107IPR009057Homeodomain-like
SMARTSM007172.8E-151262IPR001005SANT/Myb domain
PfamPF002493.3E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.1E-231467IPR009057Homeodomain-like
CDDcd001671.02E-101560No hitNo description
PROSITE profilePS5129420.58665115IPR017930Myb domain
SMARTSM007179.9E-1665113IPR001005SANT/Myb domain
PfamPF002494.2E-1466111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2368115IPR009057Homeodomain-like
CDDcd001675.09E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MGRRPCCPKE INKGAWSREE DETLSKYVSI HGEGKWQKVA QNAGLKRCGK SCRQRWLNYL  60
KPGIKRGHIS VDEEDMIIRL HRLLGNRWAL IAKRLPGRTD NEIKNYWNTN LSRKLQKHPT  120
SSVSSLQHKR HEKEKTKQMH VAPEAPRRRR VNAVEYSKNL ENGGCGNRPS TTPSPSNIEE  180
GSSEEASFSD FLMDIDQIDD SNSKVPQKEE DHHHNKVELI TNNSPSSSSL SDHCHHLLPE  240
KFDPFETFLD VELQRMASFL GVEND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.85330.0pod| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G037700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359131e-180AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003528497.10.0transcription factor MYB8
RefseqXP_028240388.10.0transcription factor MYB8-like
TrEMBLA0A445JS170.0A0A445JS17_GLYSO; Anthocyanin regulatory C1 protein
TrEMBLI1KHA70.0I1KHA7_SOYBN; Uncharacterized protein
STRINGGLYMA07G04210.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.13e-54MYB family protein