PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G037100.1.p
Common NameGLYMA_07G037100, LOC100775511
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 649aa    MW: 71432.1 Da    PI: 6.7891
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G037100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.5e-08533581348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.07G037100.1.p 533 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 581
                          7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948526585IPR017930Myb domain
SuperFamilySSF466899.79E-15528586IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-11528584IPR009057Homeodomain-like
SMARTSM007178.8E-8530583IPR001005SANT/Myb domain
CDDcd116604.59E-19532582No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0031627Biological Processtelomeric loop formation
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
METVVGIEDN DDGKFEDSGV DRSSSALSSP KQIANPIVYK LVRVEGDGRL VPATDDEVME  60
VGDFLEYENS EMHVVANTGQ SLECISIERS SSGKLRLECK EGTAEADLGE LNAKLQILQK  120
VKEEKQRISC GSPAHSHVNI DSQCSADKFP VIDGKVQSET PCQEIPSIAS SLNYTHSNQS  180
GSIDQCSRPS EGVIESGSSA SAVYSNLKPD LSMSDGEICL DKLSIRELHE LFKVTFGRET  240
TVKDKQWLKR RIAMSLTNSC DVSATTFIIK NNKIVRKFEE ESSGNMNAGS LISSGNMTEE  300
EDVNFKDSSA VNACGIEDNQ VVSETRPEIG LEDENYQTGQ RAAKRIRRPT KRYIEELSEN  360
ESREHNPRLS ISNKPMGLGH VSPTLNVRPA RNAFSEVRTY GTRLDSLGGS DVQIPCVSRV  420
RRSRPRKDIA SLMKFHPTSM GEAEKLSNKL LEHSSDAGSE FPDKVLKSRM PSKFHQPSSS  480
EPVKEQCPVI GPVELRQELR PKRADPSSHT SDDNNIVTVP TAKGGMRRKH HRAWTLVEVI  540
KLVEGVSRCG AGRWSEIKRL SFASYSYRTS VDLKDKWRNL LKASFALTPA PADEGINLRK  600
HGTAPIPEKI LLRVRELAEM NSQVPPNYSS SQLASGGGSV HGDRSGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1420426RRSRPRK
2420427RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G037100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240101.10.0uncharacterized protein LOC100775511
RefseqXP_006582881.10.0uncharacterized protein LOC100775511 isoform X1
RefseqXP_028239175.10.0uncharacterized protein LOC114418161 isoform X1
TrEMBLA0A445JRU20.0A0A445JRU2_GLYSO; Uncharacterized protein
TrEMBLE4W6A00.0E4W6A0_SOYBN; Transcription factor MYB884
STRINGGLYMA07G04160.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF78493040
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-108TRF-like 6