PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G036200.9.p
Common NameGLYMA_07G036200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YA
Protein Properties Length: 345aa    MW: 37293.6 Da    PI: 8.6799
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G036200.9.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.22.4e-32178234158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF
  Glyma.07G036200.9.p 178 EEPMYVNAKQYHAILRRRQYRAKLEAQNKL-IKERKPYLHESRHLHALKRARGSGGRF 234
                          69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.7E-37176237IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.834177237IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.0E-26179234IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.5E-24180202IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860182202IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.5E-24211234IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MKNLCENGSG PTHLTSYALG CSSWGTSSES DVQQSSMSKS LSLKMSVLPQ QCHKTKPLSF  60
QYQDRDSSST QSTGQSYPEV GSAQSVQCSN SSASSTHNTT GGKSVEGVIG STVGIQDCTF  120
PPSQLCYNQS LAHTAFHFAE PCFSGLLAAP FVPQSNIHHA QLLGMTPARI PLPLDLSEEP  180
MYVNAKQYHA ILRRRQYRAK LEAQNKLIKE RKPYLHESRH LHALKRARGS GGRFLNAKKL  240
QELKLTSANR GLDVSGCTQL NLSGNMSESK VQAVENLNYR NGASTTTCSD VISTSNSDDV  300
FQQHESDFRL CGYPSHIGRN MQGYSADIGG GGGGGNQHRL SVLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-22178239263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.303030.0leaf| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G036200.9.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ7755280.0FJ775528.1 Glycine max CCAAT-binding transcription factor family protein (NF-YA1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582867.10.0nuclear transcription factor Y subunit A-5 isoform X2
RefseqXP_025984845.10.0nuclear transcription factor Y subunit A-5 isoform X2
RefseqXP_028239147.10.0nuclear transcription factor Y subunit A-3-like isoform X2
RefseqXP_028239148.10.0nuclear transcription factor Y subunit A-3-like isoform X2
TrEMBLA0A445JS030.0A0A445JS03_GLYSO; Nuclear transcription factor Y subunit A-3 isoform E
TrEMBLK7KZG90.0K7KZG9_SOYBN; Uncharacterized protein
STRINGGLYMA07G04050.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.19e-61nuclear factor Y, subunit A3