PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G036200.5.p | ||||||||
Common Name | GLYMA_07G036200, NF-YA1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 305aa MW: 33072 Da PI: 8.8842 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.5 | 2e-32 | 138 | 194 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rakle+++kl +k+rkpylheSRh hAl+R+RgsgGrF Glyma.07G036200.5.p 138 EEPMYVNAKQYHAILRRRQYRAKLEAQNKL-IKERKPYLHESRHLHALKRARGSGGRF 194 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.7E-37 | 136 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.834 | 137 | 197 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 8.6E-27 | 139 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 6.8E-24 | 140 | 162 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 142 | 162 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 6.8E-24 | 171 | 194 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 305 aa Download sequence Send to blast |
MSVLPQQCHK TKPLSFQYQD RDSSSTQSTG QSYPEVGSAQ SGQISVQCSN SSASSTHNTT 60 GGKSVEGVIG STVGIQDCTF PPSQLCYNQS LAHTAFHFAE PCFSGLLAAP FVPQSNIHHA 120 QLLGMTPARI PLPLDLSEEP MYVNAKQYHA ILRRRQYRAK LEAQNKLIKE RKPYLHESRH 180 LHALKRARGS GGRFLNAKKL QELKLTSANR GLDVSGCTQL NLSGNMSESK VQAVENLNYR 240 NGASTTTCSD VISTSNSDDV FQQHESDFRL CGYPSHIGRN MQGYSADIGG GGGGGNQHRL 300 SVLM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-22 | 138 | 199 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.30303 | 0.0 | leaf| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G036200.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ775528 | 0.0 | FJ775528.1 Glycine max CCAAT-binding transcription factor family protein (NF-YA1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235387.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Refseq | NP_001349746.1 | 0.0 | nuclear transcription factor Y subunit A-5 | ||||
Refseq | XP_006582862.1 | 0.0 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Refseq | XP_006582864.1 | 0.0 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Refseq | XP_006582865.1 | 0.0 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Refseq | XP_014632808.1 | 0.0 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Refseq | XP_025984844.1 | 0.0 | nuclear transcription factor Y subunit A-5 isoform X1 | ||||
Refseq | XP_028239143.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_028239144.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_028239145.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_028239146.1 | 0.0 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
TrEMBL | A0A0R0J5U3 | 0.0 | A0A0R0J5U3_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445JRR1 | 0.0 | A0A445JRR1_GLYSO; Nuclear transcription factor Y subunit A-3 isoform A | ||||
TrEMBL | A0A445JS00 | 0.0 | A0A445JS00_GLYSO; Nuclear transcription factor Y subunit A-3 isoform G | ||||
TrEMBL | E0WC41 | 0.0 | E0WC41_SOYBN; CCAAT-binding transcription factor family protein | ||||
STRING | GLYMA07G04050.5 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-63 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G036200.5.p |
Entrez Gene | 100500765 |