PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G030200.1.p
Common NameGLYMA_07G030200, LOC106799207
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 354aa    MW: 39481.6 Da    PI: 6.7903
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G030200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF35.51.3e-11948140
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                         k+i+n++ r+ tf  R++g++ K + LS++C++e+++i++
  Glyma.07G030200.1.p  9 KPISNERSRKSTFKTRKEGLITKISQLSTMCGVEACLIVY 48
                         68*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.4E-9161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.12E-15178IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.853150IPR002100Transcription factor, MADS-box
CDDcd002661.89E-19282No hitNo description
PfamPF003199.3E-131150IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGRARITLKP ISNERSRKST FKTRKEGLIT KISQLSTMCG VEACLIVYDD INGDVGAVTW  60
PENPTLVRPI IENYERQRAE KPPKTFVIQD FFENRKNMVE AEISKLHKQA REIKYPTWGP  120
SLSNMEKEQL SAFIANVNAK IEACDQRIHI KSMQNMAKES ASSSHSSQLN FMQNISQSQM  180
IPTHVEPLLN DNNNGRVLNS TNQVGGASSH GVSMLRNIQQ GDVCVSYMPS MSQSQMIALE  240
TFKSLKGKNK MVDFTNQVVV PLDSTNHQLG ESLDWANHHG SFDWANGPIG TEDWSNPLNG  300
DLVGSQPDES VLQNIPILSE NDHQGVVLPT LPLSLDGFQT DCRNMFFRMS NSK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G030200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632863.10.0agamous-like MADS-box protein AGL82
TrEMBLA0A0R0J4N40.0A0A0R0J4N4_SOYBN; Uncharacterized protein
STRINGGLYMA07G03401.11e-146(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Representative plantOGRP3677621
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.17e-19M-type_MADS family protein