PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G019500.2.p
Common NameGLYMA_07G019500
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 724aa    MW: 80957.6 Da    PI: 6.156
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G019500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox672.5e-2194149156
                          TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          +rk +++t+eq++e+e+lF+++++p++++r++L+++lgL  rqVk+WFqNrR++ k
  Glyma.07G019500.2.p  94 KRKYHRHTAEQIREMEALFKESPHPDEKQRQQLSNQLGLAPRQVKFWFQNRRTQIK 149
                          79999***********************************************9877 PP
2START1035.3e-332664012117
                          HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS
                START   2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 
                          +a++a++el+k+a  +ep+Wv+s+    +++n+de++++fe +++        +ea+r++ vv+m+l++l++++ld++ qW+e+++    
  Glyma.07G019500.2.p 266 IANRATEELIKMANMGEPLWVRSVetgrDILNYDEYVKEFEVENSgserpkTFIEASRETEVVFMDLPRLLQSFLDVN-QWKEMFPclis 354
                          6899************************************888889********************************.*********** PP

                          EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE CS
                START  78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq 117
                          ka+t++vi++g      ga+qlm+aelq+l+p+vp R+++fvR+ +q
  Glyma.07G019500.2.p 355 KAATVDVICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCGKQ 401
                          ********************************************998 PP
3START70.74.1e-23402461147206
                          ESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                START 147 llpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                          ++pSg++ie+ksngh+kv+wveh +++++++h ++r +v+sgla+ga++w +tlq qce+
  Glyma.07G019500.2.p 402 KRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIETLQLQCER 461
                          68********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.13E-2081152IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.1E-2381145IPR009057Homeodomain-like
PROSITE profilePS5007118.12391151IPR001356Homeobox domain
SMARTSM003891.0E-1893155IPR001356Homeobox domain
PfamPF000461.2E-1894149IPR001356Homeobox domain
CDDcd000861.00E-1698149No hitNo description
PROSITE patternPS000270126149IPR017970Homeobox, conserved site
PROSITE profilePS5084820.781256464IPR002913START domain
SuperFamilySSF559614.53E-22258461No hitNo description
CDDcd088751.51E-89260460No hitNo description
SMARTSM002342.4E-51265461IPR002913START domain
PfamPF018521.7E-23266401IPR002913START domain
PfamPF018522.5E-16402461IPR002913START domain
SuperFamilySSF559619.75E-13491711No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 724 aa     Download sequence    Send to blast
MGVNMSNTPP HTKDLFSSSS LSLSLAGIFR HAGEAAETSG MEVAGGNEVR REDTVEISSD  60
NSGPVRSRSE EDFDGEGLHE DDDDGDDKNR KKKKRKYHRH TAEQIREMEA LFKESPHPDE  120
KQRQQLSNQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KTELDRLREE NKAMRETINK  180
SCCPNCGMVT ATIDASMSTE EKQLLIENAK LKAEVEKLRT ALGKFSPRTT SPTTSSAGHH  240
DEEENRSSLD FYNGIFGLDK SRIMDIANRA TEELIKMANM GEPLWVRSVE TGRDILNYDE  300
YVKEFEVENS GSERPKTFIE ASRETEVVFM DLPRLLQSFL DVNQWKEMFP CLISKAATVD  360
VICNGEGSNR NGAVQLMFAE LQMLTPMVPT REVYFVRCGK QKRPSGCIIE DKSNGHCKVI  420
WVEHLECQKS TIHTMYRTIV NSGLAFGARH WIETLQLQCE RLVFYMATNV PMKDSTGVAT  480
LAGRKSILKL AQRMTWSFCH AVGASSFHTW TKVTSKTGED IRISSRKNLN EPGEPLGVIL  540
CAVSSVWLPV SPNVLFDFLR DEARRNEWDI MSSGGSVQSI ANLAKGKDRG NVVNIQKIIQ  600
SKDNSVWILQ DSCTSAYEST VVYAPVEFAG IQSVLTGCDS SNLAILPSGF SILPDGIEGR  660
PLVITSRQEE KYTEGGSLFT MAFQILANPS PTTKLTMESV ESVNNLVSCT LRNIRTSLQC  720
EDG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18895NRKKKKRK
28994RKKKKR
38995RKKKKRK
49095KKKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G019500.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311640.0KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529763.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A0R0IY350.0A0A0R0IY35_SOYBN; Uncharacterized protein
STRINGGLYMA07G02220.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]