PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.07G019500.1.p | ||||||||
Common Name | Glyma07g02220.1, LOC100806193 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 752aa MW: 84101.1 Da PI: 5.7183 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66.9 | 2.7e-21 | 94 | 149 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk +++t+eq++e+e+lF+++++p++++r++L+++lgL rqVk+WFqNrR++ k Glyma.07G019500.1.p 94 KRKYHRHTAEQIREMEALFKESPHPDEKQRQQLSNQLGLAPRQVKFWFQNRRTQIK 149 79999***********************************************9877 PP | |||||||
2 | START | 224.2 | 4e-70 | 266 | 489 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.... CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla.... 77 +a++a++el+k+a +ep+Wv+s+ +++n+de++++fe +++ +ea+r++ vv+m+l++l++++ld++ qW+e+++ Glyma.07G019500.1.p 266 IANRATEELIKMANMGEPLWVRSVetgrDILNYDEYVKEFEVENSgserpkTFIEASRETEVVFMDLPRLLQSFLDVN-QWKEMFPclis 354 6899************************************888889********************************.*********** PP EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTC CS START 78 kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksng 160 ka+t++vi++g ga+qlm+aelq+l+p+vp R+++fvR+ +ql++++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksng Glyma.07G019500.1.p 355 KAATVDVICNGegsnrnGAVQLMFAELQMLTPMVPtREVYFVRCGKQLSDEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNG 443 *****************************************************************98.9********************* PP EEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 161 hskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 h+kv+wveh +++++++h ++r +v+sgla+ga++w +tlq qce+ Glyma.07G019500.1.p 444 HCKVIWVEHLECQKSTIHTMYRTIVNSGLAFGARHWIETLQLQCER 489 ********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.17E-20 | 81 | 152 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.2E-23 | 81 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.123 | 91 | 151 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-18 | 93 | 155 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.2E-18 | 94 | 149 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.29E-17 | 98 | 149 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 126 | 149 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.007 | 256 | 492 | IPR002913 | START domain |
SuperFamily | SSF55961 | 7.69E-32 | 258 | 489 | No hit | No description |
CDD | cd08875 | 5.40E-107 | 260 | 488 | No hit | No description |
SMART | SM00234 | 1.8E-71 | 265 | 489 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-55 | 266 | 489 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 3.3E-4 | 343 | 484 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 1.06E-12 | 519 | 739 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 752 aa Download sequence Send to blast |
MGVNMSNTPP HTKDLFSSSS LSLSLAGIFR HAGEAAETSG MEVAGGNEVR REDTVEISSD 60 NSGPVRSRSE EDFDGEGLHE DDDDGDDKNR KKKKRKYHRH TAEQIREMEA LFKESPHPDE 120 KQRQQLSNQL GLAPRQVKFW FQNRRTQIKA IQERHENSLL KTELDRLREE NKAMRETINK 180 SCCPNCGMVT ATIDASMSTE EKQLLIENAK LKAEVEKLRT ALGKFSPRTT SPTTSSAGHH 240 DEEENRSSLD FYNGIFGLDK SRIMDIANRA TEELIKMANM GEPLWVRSVE TGRDILNYDE 300 YVKEFEVENS GSERPKTFIE ASRETEVVFM DLPRLLQSFL DVNQWKEMFP CLISKAATVD 360 VICNGEGSNR NGAVQLMFAE LQMLTPMVPT REVYFVRCGK QLSDEQWAIV DVSIDKVEDN 420 IDASLVKCRK RPSGCIIEDK SNGHCKVIWV EHLECQKSTI HTMYRTIVNS GLAFGARHWI 480 ETLQLQCERL VFYMATNVPM KDSTGVATLA GRKSILKLAQ RMTWSFCHAV GASSFHTWTK 540 VTSKTGEDIR ISSRKNLNEP GEPLGVILCA VSSVWLPVSP NVLFDFLRDE ARRNEWDIMS 600 SGGSVQSIAN LAKGKDRGNV VNIQKIIQSK DNSVWILQDS CTSAYESTVV YAPVEFAGIQ 660 SVLTGCDSSN LAILPSGFSI LPDGIEGRPL VITSRQEEKY TEGGSLFTMA FQILANPSPT 720 TKLTMESVES VNNLVSCTLR NIRTSLQCED G* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 95 | NRKKKKRK |
2 | 89 | 94 | RKKKKR |
3 | 89 | 95 | RKKKKRK |
4 | 90 | 95 | KKKKRK |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.07G019500.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031164 | 0.0 | KT031164.1 Glycine max clone HN_CCL_123 homeodomain/HOMEOBOX transcription factor (Glyma07g02220.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003529763.1 | 0.0 | homeobox-leucine zipper protein GLABRA 2 | ||||
Swissprot | P46607 | 0.0 | HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2 | ||||
TrEMBL | A0A0K2CT17 | 0.0 | A0A0K2CT17_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment) | ||||
TrEMBL | I1KGN5 | 0.0 | I1KGN5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA07G02220.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4714 | 33 | 52 | Representative plant | OGRP9080 | 9 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.07G019500.1.p |
Entrez Gene | 100806193 |
Publications ? help Back to Top | |||
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