PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G016700.1.p
Common NameGLYMA_07G016700, LOC100775524
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 842aa    MW: 92947.2 Da    PI: 6.5388
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G016700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.62.1e-181775357
                         --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
             Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                         k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Glyma.07G016700.1.p 17 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                         5679*****************************************************97 PP
2START173.81.1e-541643712204
                          HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..E CS
                START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..g 89 
                          +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++l+v+ ++  g
  Glyma.07G016700.1.p 164 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHSCTGVAARACGLVGLEPT-RVAEILKDRPLWFQDCRAVDVLNVLPTAngG 252
                          7899******************************************************.8888888888****************9999* PP

                          EEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
                START  90 alqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                          +++l +++l+a+++l+p Rdf+ +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h++l+ +
  Glyma.07G016700.1.p 253 TIELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMNLEPW 342
                          ************************************************9988899*********************************** PP

                          XXHHHHHHHHHHHHHHHHHHHHHHTXXXX CS
                START 176 lphwllrslvksglaegaktwvatlqrqc 204
                          +++++lr+l++s+++ ++kt   +l++++
  Glyma.07G016700.1.p 343 SVPEVLRPLYESSTVLAQKTSIVALRHLR 371
                          ********************999888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5641276IPR001356Homeobox domain
SMARTSM003891.1E-151480IPR001356Homeobox domain
SuperFamilySSF466891.41E-161678IPR009057Homeodomain-like
CDDcd000861.41E-161777No hitNo description
PfamPF000465.9E-161875IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.5E-181975IPR009057Homeodomain-like
CDDcd146862.77E-669108No hitNo description
PROSITE profilePS5084824.187154355IPR002913START domain
CDDcd088759.54E-78158373No hitNo description
Gene3DG3DSA:3.30.530.201.7E-21163368IPR023393START-like domain
SuperFamilySSF559616.87E-37163352No hitNo description
SMARTSM002343.3E-40163373IPR002913START domain
PfamPF018523.5E-52164372IPR002913START domain
SuperFamilySSF559614.73E-5400494No hitNo description
SuperFamilySSF559614.73E-5524599No hitNo description
PfamPF086701.5E-50698840IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 842 aa     Download sequence    Send to blast
MSCKDGSRNG IGMDNGKYVR YTPEQVEALE RLYHDCPKPS SIRRQQLIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQAVNRKLT AMNKLLMEEN DRLQKQVSQL VYENGYFRQH  120
TTQNTKQQPT KDTSCESAVT SGQQHNLTTQ HPPRDASPAG LLSIAEETLA EFLSKATGTA  180
VEWVQMPGMK PGPDSIGIVA ISHSCTGVAA RACGLVGLEP TRVAEILKDR PLWFQDCRAV  240
DVLNVLPTAN GGTIELLYMQ LYAPTTLAPA RDFWLLRYTS VLEDGSLVIC ERSLKNTQNG  300
PSMPPVQHFV RAEMLPSGYL IRPCEGGGSI IHIVDHMNLE PWSVPEVLRP LYESSTVLAQ  360
KTSIVALRHL RQISHEVSQS NVTGWGRRPA ALRALSQRLS RGFNEALNGF TDEGWTTIGN  420
DGVDDVTILV NSSPDKLMGL NLSFANGFPS VSNAVLCAKA SMLLQNVPPA ILLRFLREHR  480
SEWADNNMDA YTAAAIKVGP CSLSGSRVGN YGGQVILPLA HTIEHEEFLE VIKLEGIAHS  540
PEDTIMPREM FLLQLCSGMD ENAVGTCAEL ISAPIDASFA DDAPLLPSGF RIIPLESGKE  600
ASSPNRTLDL ASALDIGSSG NRASNECAGN SSYMRSVMTI AFEFAFESHM QEHVASMARQ  660
YVRSIISSVQ RVALALSPSH LSSHAGLRSP LGTPEAQTLA HWICNSYRCY LGVELLKSNN  720
EGNESLLKSL WHHSDAILCC TLKALPVFTF SNQAGLDMLE TTLVALQDTP LEKIFDDHGR  780
KILFSEFPQI IQQGFVCLQG GICLSSMGRP VSYERVVAWK VLNEEENAHC MCFMFMNWSF  840
V*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.604860.0cotyledon| hypocotyl| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed the developing vascular elements and the adaxial portion of cotyledons. Expressed in developing ovules, stamens and carpels. Expressed in procambium and shoot meristem. {ECO:0000269|PubMed:14701930, ECO:0000269|PubMed:15705957}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G016700.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530112.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_014633132.10.0homeobox-leucine zipper protein ATHB-15
RefseqXP_014633133.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLI1KGK20.0I1KGK2_SOYBN; Uncharacterized protein
STRINGGLYMA07G01950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Representative plantOGRP6511671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]