PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.07G009500.1.p
Common NameGLYMA_07G009500, LOC100786728
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LBD
Protein Properties Length: 326aa    MW: 36525.7 Da    PI: 5.7175
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.07G009500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601284.5e-40431421100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          aCaaCk++rrkCa+dC+lapyfp++++++f n+hklFG+sn++k++k l+++++++am++++y++++ra dPv G+++ il+lq q+e  
  Glyma.07G009500.1.p  43 ACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKLLSPQDKDQAMRTIIYQSDMRATDPVGGCYRYILELQAQIEYY 132
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael+l+ ++
  Glyma.07G009500.1.p 133 RAELELVLQQ 142
                          ****998776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.90642143IPR004883Lateral organ boundaries, LOB
PfamPF031952.2E-3743139IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MQPKSHTPFF VPPQKAMNNN NPNNNNTNNR ISTPRNGNSA TQACAACKYQ RRKCAPDCIL  60
APYFPHDRQR QFLNAHKLFG VSNITKIIKL LSPQDKDQAM RTIIYQSDMR ATDPVGGCYR  120
YILELQAQIE YYRAELELVL QQLAIFRAQA QHQHQQQHGI FAANNVNVAV NGDGEVLNGD  180
PMGLYNQQQH YQCLQAQQEE EQYVMMHENG NGSQNIDGIA LQEQIKTWAV QNTAVSLSSL  240
SLHGQNSNVS DEYDHKPVVG IDMDSDERSE LGFESEELVH RSDEAVLFKI DDAVIKAEAN  300
PCMQQAQDHD LKGAATSFTL TNCSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-25391377105LOB family transfactor Ramosa2.1
5ly0_B4e-25391377105LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.07G009500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003529729.20.0LOB domain-containing protein 22
TrEMBLA0A0R0J3T70.0A0A0R0J3T7_SOYBN; Uncharacterized protein
STRINGGLYMA07G01170.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41333259
Representative plantOGRP55241021
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13850.11e-56LOB domain-containing protein 22