PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G312900.1.p | ||||||||
Common Name | GLYMA_06G312900, LOC100805804 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 515aa MW: 56769.4 Da PI: 4.7445 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.3 | 1.5e-17 | 35 | 82 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed llv++v+++G g+W+++ ++ g+ R++k+c++rw ++l Glyma.06G312900.1.p 35 KGPWTAAEDALLVNYVQKHGEGNWNAVQNYSGLSRCGKSCRLRWANHL 82 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.5 | 9.6e-16 | 88 | 131 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ ++++++++G++ W++ a++++ gRt++++k++w++ Glyma.06G312900.1.p 88 KGAFTAEEERMIAELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 131 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.129 | 30 | 82 | IPR017930 | Myb domain |
SMART | SM00717 | 3.7E-15 | 34 | 84 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 7.49E-31 | 34 | 129 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.6E-16 | 35 | 82 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-23 | 36 | 89 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.20E-11 | 37 | 82 | No hit | No description |
PROSITE profile | PS51294 | 24.117 | 83 | 137 | IPR017930 | Myb domain |
SMART | SM00717 | 3.8E-16 | 87 | 135 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.4E-15 | 88 | 131 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 90 | 136 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-11 | 90 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MSQMTNEVDN NVHYDDQTGS QLNDDGNGVG VVLKKGPWTA AEDALLVNYV QKHGEGNWNA 60 VQNYSGLSRC GKSCRLRWAN HLRPNLKKGA FTAEEERMIA ELHAKMGNKW ARMAAHLPGR 120 TDNEIKNYWN TRMKRRRRAG LPLYPPEVLL QAFQERKHGQ GTGEISDGDG GHRDFLKKNN 180 YEIHDAIFDS LKENQGILPF LPDLPAISAN SFLPNGLGSP PYCNLLPSTL PNHDHLQEST 240 MSFIGSSELN SNRFYPFDHI KDNTSDKISE SFGLYSPLDR GVSHGSICYS HSLSNGNSST 300 SKPTSEAVKS ELPSLQIPET EFGSWGTSPP PPLNESLDVF IHSPQPPNAL DSGSSSPLNS 360 GLLDALLYQA NTLGCSKNNS SDKSSNSSIA TPGDRAECSA LNMYETEWED YADPLSPFGA 420 TSILNEHPVV STNGNSWDEW ELFQTFSENS AGNNERLQSI DQVWTPKSEN QSMSLLNFTL 480 PDVLITSDWH ELYSDHDSTN QAIMTEASDD ISGQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1mse_C | 1e-30 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 1e-30 | 32 | 136 | 1 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G312900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187165 | 0.0 | AC187165.17 Glycine max cultivar Williams 82 clone gmw2-91b16, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006582387.1 | 0.0 | transcription factor GAMYB isoform X1 | ||||
TrEMBL | K7KYG3 | 0.0 | K7KYG3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G47000.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2047 | 34 | 85 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11440.1 | 9e-92 | myb domain protein 65 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G312900.1.p |
Entrez Gene | 100805804 |