PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G300400.1.p
Common NameGLYMA_06G300400, LOC106799185
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 243aa    MW: 27500.6 Da    PI: 6.5077
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G300400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151562148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT+eEd +l+  v+ +G ++W+  ++  g+ R++k+c++rw +yl
  Glyma.06G300400.1.p 15 KGTWTPEEDWKLIAHVNAHGHKNWRQLPKLAGLARCGKSCRLRWVNYL 62
                         799*******************************************97 PP
2Myb_DNA-binding50.74e-1668112147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ T eE+e ++++ + lG++ W+ Ia++++ gR+++++k++w+ +
  Glyma.06G300400.1.p  68 RGNYTHEEEETIIKLRTSLGNR-WSVIASHLP-GRSDNEIKNHWHAH 112
                          899*******************.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.21066IPR017930Myb domain
SuperFamilySSF466893.0E-2912109IPR009057Homeodomain-like
SMARTSM007171.6E-111464IPR001005SANT/Myb domain
PfamPF002497.6E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-221669IPR009057Homeodomain-like
CDDcd001677.80E-101762No hitNo description
PROSITE profilePS5129417.55267117IPR017930Myb domain
SMARTSM007175.9E-1567115IPR001005SANT/Myb domain
PfamPF002499.3E-1468112IPR001005SANT/Myb domain
CDDcd001672.14E-1070113No hitNo description
Gene3DG3DSA:1.10.10.609.2E-2470116IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MVKTPYCDKK SGLKKGTWTP EEDWKLIAHV NAHGHKNWRQ LPKLAGLARC GKSCRLRWVN  60
YLRPGIKRGN YTHEEEETII KLRTSLGNRW SVIASHLPGR SDNEIKNHWH AHLKKRFQHD  120
EASTPKLHLS TVESIQENNY SVEVDPSPFQ NSSPATYDAS PSSHHTSMSD FSSMITEPAS  180
ASSDGNLVID GFADFTEENT DPISAYSWEE LYEISYFSGE FLAPFVTEPQ SFCPVYDVWG  240
LL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-251311725128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G300400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150391e-35AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632647.10.0transcription factor MYB4
RefseqXP_028238215.10.0transcription factor MYB4-like
SwissprotQ9SJX85e-56MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445KFX60.0A0A445KFX6_GLYSO; Transcription factor MYB14 isoform A
TrEMBLK7KY810.0K7KY81_SOYBN; Uncharacterized protein
STRINGGLYMA06G45570.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G05100.13e-57myb domain protein 74
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]