PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G300300.1.p | ||||||||
Common Name | GLYMA_06G300300, LOC100777621 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 231aa MW: 26587.6 Da PI: 6.3974 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.1e-17 | 15 | 62 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd++lv++++++G +W++ ++ g+ R++k+c++rw++yl Glyma.06G300300.1.p 15 KGTWTPEEDKKLVEYITRYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 62 799*****************99************************97 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.3e-19 | 68 | 112 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T+eE+e ++++++ lG++ W++Ia++m+ gRt++++k++w++ Glyma.06G300300.1.p 68 RGNYTKEEEETIIKLHRHLGNR-WSAIAARMP-GRTDNEIKNHWHTN 112 899*******************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.217 | 10 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.51E-29 | 12 | 109 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.7E-11 | 14 | 64 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.6E-15 | 15 | 62 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.0E-23 | 16 | 69 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.76E-9 | 17 | 62 | No hit | No description |
PROSITE profile | PS51294 | 26.607 | 63 | 117 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-17 | 67 | 115 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.3E-17 | 68 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.88E-12 | 70 | 113 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-25 | 70 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MMVRTPSCDK NGVKKGTWTP EEDKKLVEYI TRYGHWNWRL LPKFAGLARC GKSCRLRWLN 60 YLRPNLKRGN YTKEEEETII KLHRHLGNRW SAIAARMPGR TDNEIKNHWH TNLKKRSQQD 120 SVATESIVSN SNDQSPTEQP TANTTFQSFN STTQDCSPLS QHSSPSTSTV VSTENLVLME 180 DEFAFWDSDT DLMSGNFWLE PYMLDISYVP ASEPEYSSQV FDVELWSHDT * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-29 | 15 | 116 | 7 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G300300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 3e-39 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526305.2 | 1e-174 | transcription factor MYB14 | ||||
TrEMBL | K7KY79 | 1e-173 | K7KY79_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G45554.1 | 1e-173 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF356 | 33 | 186 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-61 | myb domain protein 14 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G300300.1.p |
Entrez Gene | 100777621 |