PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G300100.1.p
Common NameGLYMA_06G300100, LOC778087
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 319aa    MW: 36011.9 Da    PI: 5.0894
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G300100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.9e-151461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g WT eEd +l+ +v+++G+ +W+  +r  g+ R++k+c++rw +yl
  Glyma.06G300100.1.p 14 KGTWTLEEDRKLIAYVTRYGSWNWRQLPRFAGLARCGKSCRLRWMNYL 61
                         799*******************************************97 PP
2Myb_DNA-binding58.61.4e-1867111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg++T++E+e +++ +k+lG++ W+tIa++++ gRt++++k++w++ 
  Glyma.06G300100.1.p  67 RGNFTQQEEEFIIRMHKKLGNR-WSTIAAELP-GRTDNEIKNHWHTT 111
                          89********************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-22664IPR009057Homeodomain-like
PROSITE profilePS5129415.131961IPR017930Myb domain
SuperFamilySSF466892.77E-2911108IPR009057Homeodomain-like
SMARTSM007177.2E-101363IPR001005SANT/Myb domain
PfamPF002495.9E-131461IPR001005SANT/Myb domain
CDDcd001678.55E-91661No hitNo description
PROSITE profilePS5129427.36462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.4E-2665115IPR009057Homeodomain-like
SMARTSM007171.4E-1766114IPR001005SANT/Myb domain
PfamPF002494.5E-1667111IPR001005SANT/Myb domain
CDDcd001671.44E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MVRTPSCDKS GMRKGTWTLE EDRKLIAYVT RYGSWNWRQL PRFAGLARCG KSCRLRWMNY  60
LRPDVKRGNF TQQEEEFIIR MHKKLGNRWS TIAAELPGRT DNEIKNHWHT TLKKRSQQNT  120
LTKEEARASK SKDKVLPNKG VTVTLPATSS QISDNSSLSP ASSTSSEFSN ITSDPSTAAS  180
MQNLVFEDDD EFGFLDSYID PMNNESFWKE LTLDDISFNN VPIVSEDTNG CFQSTSSSNS  240
NTLDSLHKST SESIVADNDF GGFFDAYAEA TVDNFWTQPY VAGMSSHVPT ELLAPSVAES  300
EYFTPIYDDL WGQTHLYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-29141154104C-Myb DNA-Binding Domain
1msf_C1e-29141154104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.27640.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}.
UniprotTISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G300100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526303.10.0transcription factor MYB30
SwissprotQ9SJX86e-56MYB14_ARATH; Transcription factor MYB14
TrEMBLI1KF820.0I1KF82_SOYBN; Uncharacterized protein
STRINGGLYMA06G45540.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.13e-57myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]