PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G299900.1.p
Common NameGLYMA_06G299900, LOC100781032
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 236aa    MW: 27464.3 Da    PI: 5.8276
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G299900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEd++l+ +v+++G ++W+  ++  g+ R++k+c++rw +yl
  Glyma.06G299900.1.p 14 KGAWSVEEDKRLIAYVERYGHPNWRQLPKFAGLQRCGKSCRLRWMNYL 61
                         79********************************************97 PP
2Myb_DNA-binding55.61.2e-1767112148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          rg+ T+ E++++ d++k++G++ W++Ia+ ++ gRt++++k++w+++l
  Glyma.06G299900.1.p  67 RGNYTQKEEQIITDLHKKHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 112
                          899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-23864IPR009057Homeodomain-like
PROSITE profilePS5129417.808961IPR017930Myb domain
SuperFamilySSF466891.98E-3011108IPR009057Homeodomain-like
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002491.8E-151461IPR001005SANT/Myb domain
CDDcd001671.18E-91661No hitNo description
PROSITE profilePS5129425.43262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2665114IPR009057Homeodomain-like
SMARTSM007178.7E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1567112IPR001005SANT/Myb domain
CDDcd001676.59E-1169112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MVRAPYFDKN GIKKGAWSVE EDKRLIAYVE RYGHPNWRQL PKFAGLQRCG KSCRLRWMNY  60
LRPNLKRGNY TQKEEQIITD LHKKHGNKWS LIAENLPGRT DNEIKNYWHS HLKKFLKDNE  120
NTPFDDDELK SSECEEFERP INEALSGDSH HILESSVSIS SETSYTEDNS PSFSSSHTTE  180
SSTLNYSREE HSVASWETLD AFSSNFWTEP FISENAISQD YFPISSYGTE PFFLW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.249880.0flower| leaf| meristem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G299900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003527470.11e-176transcription factor MYB30
TrEMBLI1KF811e-174I1KF81_SOYBN; Uncharacterized protein
STRINGGLYMA06G45520.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.12e-55myb domain protein 14