PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G290100.1.p
Common NameGLYMA_06G290100, LOC100800123
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C3H
Protein Properties Length: 352aa    MW: 39444.9 Da    PI: 7.8149
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G290100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH247e-08122142526
                          --SGGGGTS--TTTTT-SS-SS CS
              zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           C+ f+r G+C +Gd C F+Hg
  Glyma.06G290100.1.p 122 VCPEFRR-GQCDRGDACEFSHG 142
                          7******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.291117144IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-4117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-4121144IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-6122142IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.287152176IPR000571Zinc finger, CCCH-type
SMARTSM003562.4152175IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MSSVFSEHKF QLQPSHQLLS LKKSLGDIDI PVPPRKLLTR RSAAVHDGSG DIYLPHSGST  60
DSSTDDDSDG DPYASDQFRM FEFKVRRCSR SRSHDWTDCP FVHPGEKARR RDPRRFYYSG  120
TVCPEFRRGQ CDRGDACEFS HGVFECWLHP SRYRTEACKD GKNCKRKVCF FAHTPRQLRV  180
FHSNDNSNKK KCTDISPHNN NNCCLVCHCS NSTRSPTSTL FGMSHFSPPL SPPSPSSPSM  240
FETNNHHHGV VKYNKDVFSE LVCSMEGLNF DEASSLLSAA SKPHHHNNLS SWLDVSKDHN  300
QKQFNTLNSP TITACGSFSN NGNGGFLRAE NGVVVDDVIA PDLAWVNELL M*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610090.0seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in seeds. {ECO:0000269|PubMed:18487351}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription repressor that functions as negative regulator of phytochrome-mediated promotion of seed germination. Inhibits seed germination by regulating the expression of gibberellic acid (GA) and abscisic acid (ABA) metabolic genes. Does not regulate the expression of the DELLA genes RGA and RGA1. Activated by PIL5, a phytochrome-interacting basic helix-loop-helix transcription factor. {ECO:0000269|PubMed:18487351}.
Function -- GeneRIF ? help Back to Top
  1. GmZF351, encoding a tandem CCCH zinc finger protein GLYMA06G44440 (Glyma.06g290100), may have potential in the improvement of oil production in soybean and other related crops.
    [PMID: 28184009]
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G290100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311540.0KT031154.1 Glycine max clone HN_CCL_145 C3H-type 1 Zn transcription factor (Glyma12g13300.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526267.10.0zinc finger CCCH domain-containing protein 2
RefseqXP_028238105.10.0zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA12e-73C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A445KFQ10.0A0A445KFQ1_GLYSO; Zinc finger CCCH domain-containing protein 2
TrEMBLI1KEZ70.0I1KEZ7_SOYBN; Uncharacterized protein
STRINGGLYMA06G44440.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62612644
Representative plantOGRP11701644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.15e-69C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li QT, et al.
    Selection for a Zinc-Finger Protein Contributes to Seed Oil Increase during Soybean Domestication.
    Plant Physiol., 2017. 173(4): p. 2208-2224
    [PMID:28184009]
  3. Chang G, et al.
    AFP2 as the novel regulator breaks high-temperature-induced seeds secondary dormancy through ABI5 and SOM in Arabidopsis thaliana.
    Biochem. Biophys. Res. Commun., 2018. 501(1): p. 232-238
    [PMID:29723526]