PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G288500.1.p | ||||||||
Common Name | GLYMA_06G288500, LOC100795895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 286aa MW: 32385.4 Da PI: 8.3792 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 104.7 | 1.2e-32 | 49 | 189 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 lp+G++F+Ptd+e++ e+L++kv+++ ++l+ +++ +i++++P++Lp v+++ +fF++ +k+y+tg+rk+r+++ Glyma.06G288500.1.p 49 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHsde 136 799***********9.99*****99984443333333222333336**********.555555677******************855455 PP NAM 80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 + +W++tgk+++v++ +l+g kk+Lv+y g+++k+ekt+Wvmh+y+l Glyma.06G288500.1.p 137 dgsETRWHKTGKTRPVYN-IAKLKGYKKILVLYtnYGKQRKPEKTNWVMHQYHL 189 555778************.8999**********6657999999*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.72E-36 | 44 | 208 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 32.74 | 49 | 208 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-15 | 50 | 189 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 286 aa Download sequence Send to blast |
MTQCSDSENN HHNIIVEGRK DSLIRTCPTC GHHIKCQEQG GGIHDLPGLP AGVKFDPTDQ 60 EILEHLEAKV RSDIHKLHPL IDEFIPTLEG ENGICYTHPE KLPGVSKDGL IRHFFHRPSK 120 AYTTGTRKRR KVHSDEDGSE TRWHKTGKTR PVYNIAKLKG YKKILVLYTN YGKQRKPEKT 180 NWVMHQYHLG SDEEEKEGEL VVSKVFYQTQ PRQCGSLMKD SSVPPGKHMK GQSVHVEVMN 240 NNKNSNNNGY VEYYHSSNFI SFDQGGQNAQ VISHFPVHEG APFIP* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G288500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235102 | 0.0 | AC235102.1 Glycine max strain Williams 82 clone GM_WBa0006K18, complete sequence. | |||
GenBank | AC235165 | 0.0 | AC235165.1 Glycine max strain Williams 82 clone GM_WBa0104E24, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003526260.1 | 0.0 | NAC domain-containing protein 73 | ||||
Refseq | XP_028238079.1 | 0.0 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-117 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A445KFG1 | 0.0 | A0A445KFG1_GLYSO; NAC domain-containing protein 73 | ||||
TrEMBL | K7KY03 | 0.0 | K7KY03_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G44250.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1228 | 34 | 108 | Representative plant | OGRP525 | 15 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28500.1 | 1e-119 | NAC domain containing protein 73 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G288500.1.p |
Entrez Gene | 100795895 |
Publications ? help Back to Top | |||
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