PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G249100.1.p
Common NameGLYMA_06G249100, SNAC41
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 369aa    MW: 40939.2 Da    PI: 6.7434
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G249100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.41.3e-53181431128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeelvv+yLkkkv++ +l++ ++i++vd+yk++Pw+Lp++++ + +ewyfFs+r++ky++g r+nra++sgyWkatg+dk
  Glyma.06G249100.1.p  18 LPPGFRFHPTDEELVVHYLKKKVDSVPLPV-SIIADVDLYKFDPWELPAMASFGAEEWYFFSPRERKYPNGARPNRAATSGYWKATGTDK 106
                          79****************************.89***************88788999********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++s ++++vg+kk+Lvfy g+ pkg+ktdW+mheyr+
  Glyma.06G249100.1.p 107 PICS-GTQKVGVKKSLVFYGGKPPKGVKTDWIMHEYRV 143
                          ****.999****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.07E-659177IPR003441NAC domain
PROSITE profilePS5100560.52118177IPR003441NAC domain
PfamPF023654.5E-2819143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MESTEDSSTS SQQQQPNLPP GFRFHPTDEE LVVHYLKKKV DSVPLPVSII ADVDLYKFDP  60
WELPAMASFG AEEWYFFSPR ERKYPNGARP NRAATSGYWK ATGTDKPICS GTQKVGVKKS  120
LVFYGGKPPK GVKTDWIMHE YRVAENKPNN RPPGCDLGHK KNSLRLDDWV LCRIYKKGNT  180
QRSHERDDSM DDMIGEVPPS INVGHMNARF HLSKMSTSYS GALLENDRNT LEGVVIGNGN  240
VNGINTNSIN AISSSSSHHQ FASSNSKAEL LPFAPSNNNT SNSASKRTLS SLYWNVDDDN  300
DDDDHKHFNL DSNGNVSVLR TEENNNNTNG TSGSFATLLN QLPQTPSLPQ IDGLLRTPYQ  360
IQGTNWYG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-721317910170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.84050.0flower| leaf| pod| seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed throughout anthers from stages 8 to 12. Later confined to distal region of anthers from stage 13. {ECO:0000269|PubMed:16055634}.
UniprotTISSUE SPECIFICITY: Stamen specific, in anthers from stage 8 (PubMed:15100403, PubMed:16055634). Expressed in the outer integument, but seems not expressed in the embryo at the torpedo stage (PubMed:18849494). {ECO:0000269|PubMed:15100403, ECO:0000269|PubMed:16055634, ECO:0000269|PubMed:18849494}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family (Probable). Together with NAC018/NARS2, regulates embryogenesis by regulating the development and degeneration of ovule integuments, a process required for intertissue communication between the embryo and the maternal integument (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G249100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By Jasmonic acid (JA). {ECO:0000269|PubMed:16805732}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573060.0KF657306.1 Glycine max NAC transcription factor (SNAC41) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001274379.10.0NAC domain-containing protein 18-like
SwissprotQ9LD441e-111NAC56_ARATH; NAC transcription factor 56
TrEMBLV5TF250.0V5TF25_SOYBN; NAC transcription factor
STRINGGLYMA06G38440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15510.11e-104NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]