PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G234700.1.p | ||||||||
Common Name | GLYMA_06G234700, LOC100781030 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 201aa MW: 22959.7 Da PI: 7.2322 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.8 | 4.9e-20 | 28 | 80 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++q+ +Le++F +n+++ e++ +LA++lgL+ rqV +W+qN+Ra++k Glyma.06G234700.1.p 28 KKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWK 80 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 114.2 | 8.2e-37 | 27 | 118 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 +k+rl+++qv++LE++F+++ kLepe+K +la++Lgl prqva+W+qn+RAR+kt+ lE+d+ +L+++++++++e+++Lek+ve+L++el Glyma.06G234700.1.p 27 NKKRLTEDQVAILEKCFSSNMKLEPEQKFHLANQLGLPPRQVAIWYQNKRARWKTQSLEVDHGVLQARLENVVAEKKQLEKDVERLKAEL 116 79***************************************************************************************9 PP HD-ZIP_I/II 92 ke 93 k+ Glyma.06G234700.1.p 117 KK 118 97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.55E-18 | 14 | 83 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.18 | 22 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-16 | 24 | 86 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.39E-16 | 28 | 83 | No hit | No description |
Pfam | PF00046 | 2.5E-17 | 28 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-19 | 29 | 86 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 57 | 80 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009646 | Biological Process | response to absence of light | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGDFIFSFKT QQQEHHAHHQ RAKHNNNKKR LTEDQVAILE KCFSSNMKLE PEQKFHLANQ 60 LGLPPRQVAI WYQNKRARWK TQSLEVDHGV LQARLENVVA EKKQLEKDVE RLKAELKKAQ 120 EMLLITNSVK GGDHNNNNAC EFSTSFEEGG SSGVVLDDAT YHHHHECWQS GGEVMQVEEL 180 YAYFVGANYG TGLHEKGHKI * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.26374 | 0.0 | hypocotyl |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G234700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235414 | 0.0 | AC235414.1 Glycine max strain Williams 82 clone GM_WBb0131H01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003527218.1 | 1e-149 | homeobox-leucine zipper protein ATHB-52 | ||||
Refseq | XP_028237640.1 | 1e-149 | homeobox-leucine zipper protein ATHB-52-like | ||||
TrEMBL | A0A0B2SAY1 | 1e-148 | A0A0B2SAY1_GLYSO; Homeobox-leucine zipper protein ATHB-52 | ||||
TrEMBL | I1KDP7 | 1e-148 | I1KDP7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G35050.1 | 1e-148 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11011 | 22 | 39 | Representative plant | OGRP129 | 16 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G53980.1 | 1e-35 | homeobox protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G234700.1.p |
Entrez Gene | 100781030 |