PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G232300.1.p | ||||||||
Common Name | GLYMA_06G232300, LOC100810078 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 392aa MW: 42483.6 Da PI: 6.9169 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 116.7 | 3e-36 | 42 | 170 | 2 | 114 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssa.....sece 74 +g+kdrhsk++T++g+RdRRvRl a++a++f+d+qd+LG+d++sk+++WL+++ak+ai++l+++ + +ce Glyma.06G232300.1.p 42 TGRKDRHSKVCTAKGPRDRRVRLAAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKAAIDQLAELppwnptatsmqpR---QlpqeiVHCE 128 79**************************************************************8866555433331...0222221121 PP TCP 75 aesssssasnsssg.............kaaksaakskksqksaasalnlakes 114 ++s + +++++ s+++ +++++a+n++ +s Glyma.06G232300.1.p 129 NKSL---------AmddsmtaafssrgESNAF--ASHQQVEDNENANNISSSS 170 1111.........1222222333321122222..3333333333334554444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 9.0E-33 | 42 | 168 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.537 | 44 | 102 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MGELQHHQQQ AAAAAAPSRA AMRGVGGGEI VEVQGGHIVR STGRKDRHSK VCTAKGPRDR 60 RVRLAAHTAI QFYDVQDRLG YDRPSKAVDW LIKKAKAAID QLAELPPWNP TATSMQPRQL 120 PQEIVHCENK SLAMDDSMTA AFSSRGESNA FASHQQVEDN ENANNISSSS GNKYNTGSGF 180 LPASLDTDNI AETIKTFFPV EATSTSFQSY PPAPPDLGHQ DLRLSLQSFQ DPIMLHHQPH 240 SHHQPVLFAG TAAAALDFDG GSGWSEHLHQ HQQQNHHSEE QRLLYAGGNS GHGGGFVFNT 300 PAPVQVPAFG QFFSQRGPLQ SSNTPSIRAW IDPSVDHHHH HHHYLSQLIH QGSVAGGGGF 360 SGFRIPARIQ GEEEHDGVSD KPSSASSDSR H* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 1e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 1e-20 | 49 | 102 | 1 | 54 | Putative transcription factor PCF6 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9229 | 0.0 | pod| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: First observed in the distal and middle regions of cotyledons of torpedo-shaped embryos. Later localized in bending cotyledon, and mature embryos, but no signals were detected in the presumptive shoot apical meristem (SAM) and the boundary region during embryogenesis. During flower development, first observed throughout the floral meristem. Later expressed in rapidly growing floral primordia. Detected to a lower extent in vegetative primordia. During flower development, first observed throughout the floral meristem. Expressed during ovule development (PubMed:25378179). {ECO:0000269|PubMed:10363373, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in cotyledons, particularly in the vascular region, in leaves, roots, buds, flowers and immature siliques. {ECO:0000269|PubMed:17307931}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00203 | DAP | Transfer from AT1G53230 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G232300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 3e-93 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006582137.1 | 0.0 | transcription factor TCP3 | ||||
Swissprot | Q9MAH8 | 1e-100 | TCP3_ARATH; Transcription factor TCP3 | ||||
TrEMBL | I1KDN1 | 0.0 | I1KDN1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G34330.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 5e-70 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G232300.1.p |
Entrez Gene | 100810078 |
Publications ? help Back to Top | |||
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