PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G222900.1.p
Common NameGLYMA_06G222900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 736aa    MW: 84992.4 Da    PI: 5.5532
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G222900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.42e-12104180189
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                          +fY+ YAk  GFsvrks+  ++ +  e+ ++tfvCs+ g+r+++++             +gC+a+++v+ +  + +w+vt  + +HnH l
  Glyma.06G222900.1.p 104 QFYCWYAKISGFSVRKSHIVRN-TCMETLQQTFVCSCAGYRRKKESM------------CGCEAMFHVHVHFcTRRWYVTCWNFDHNHLL 180
                          6*****************9999.66679************9997665............*****************************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-8104180IPR004330FAR1 DNA binding domain
PfamPF105513.8E-10314354IPR018289MULE transposase domain
PROSITE profilePS509669.742515562IPR007527Zinc finger, SWIM-type
SMARTSM005750.0041537564IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 736 aa     Download sequence    Send to blast
MSELESSDNF CSLVNGDDDN DVTEVYPNDD DGQHDVGLED EDEVDSEVHN DDGGDYDEFW  60
IPGLLKEECI SIDSMVDIRQ FDMEEITNEV VRRLDFGDLE LAYQFYCWYA KISGFSVRKS  120
HIVRNTCMET LQQTFVCSCA GYRRKKESMC GCEAMFHVHV HFCTRRWYVT CWNFDHNHLL  180
LDLKLSCLLL GHRKMSASNI MQVENYIKVG IRPPHMYATF ANRCGGYDKV GFISKDIYNE  240
EGRMRKQHTS DASGALKYLH DLRRKDPMMY VSYTADEGLR LQRLFWCDTE SQLLYEVFGD  300
VLAFDAMPLI RKITMKGKTP CSIITDGDLA MRNAITRVMP GVFHRLCAWH LLHNALSHVR  360
DKQVLKWLKN LMLSDFEVVE FEEKWKEMVV MFELEDNTWI SPAHLRGYFF AGIRTTSRCE  420
AFHAHVAKYV HSRTNLTDFV EQFQRCLTSF RYRVVMADYS STYGNEVLQT NLRSLERSGD  480
HLLTKEMFRL FQSYLCRTIK LRVVDCKEMA TFSIYTVLKY CSGSVWLVSY CPSTVDFSCS  540
CMRMQSIGLP CDHILVVLVS LNFMELPKYA TLVEVGRQVC EDAYRDEDEY EKMLHFLPNE  600
VRRLKSKNNS EPCIDDNDEQ ADQQGDNYDG CGQVGVDESG KQRRIQKCGQ CGGSGHNKQS  660
CTNHPRNANI CVGGSFISSS EQANTMCQPT DEYNYELNYP LETYKWKHHS IIVDVDATLI  720
AHDVLCHPCL TETYK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G222900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2351480.0AC235148.1 Glycine max strain Williams 82 clone GM_WBa0082C08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006590087.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A0R0JKF60.0A0A0R0JKF6_SOYBN; Uncharacterized protein
STRINGGLYMA11G29330.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.19e-42FAR1-related sequence 5