PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G221200.1.p | ||||||||
Common Name | GLYMA_06G221200, LOC100790009 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28459.9 Da PI: 7.3274 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41 | 3.5e-13 | 74 | 120 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h+e+E+rRR+riNs +++Lr+llP + K +Ka+ L k+v+ +++L Glyma.06G221200.1.p 74 RNHKEAEKRRRERINSHLDKLRTLLPCN-----SKTDKASLLAKVVQRVREL 120 58*************************8.....7************998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.739 | 71 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.57E-14 | 74 | 131 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-11 | 74 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.02E-12 | 74 | 125 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.2E-14 | 75 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 5.2E-12 | 77 | 126 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 1.0E-4 | 167 | 230 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MMHRQIEMEN SELFQFLTNT NDAFFNTASY GLPAAPAAST MQHSFSGSFS YYPLEASHDH 60 HAPSHEDKAL AALRNHKEAE KRRRERINSH LDKLRTLLPC NSKTDKASLL AKVVQRVREL 120 KQQISSLSDS EAFPSETDEV SVLSTSGDND DHGGCDDNDG RLIFKASLCC EDRSDLIPEL 180 IEILRSLRLK TLKAEMATLG GRTRNVLVVA TDKDHSGESI QFLQNSLKSL VERSSNSNDR 240 SKRRRVLDRK FIA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 241 | 245 | KRRRV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G221200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003520293.2 | 0.0 | transcription factor bHLH106 | ||||
Refseq | XP_028208327.1 | 0.0 | transcription factor bHLH106-like | ||||
Swissprot | O80674 | 9e-73 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | A0A445LQ15 | 0.0 | A0A445LQ15_GLYSO; Transcription factor bHLH106 | ||||
TrEMBL | K7K8S9 | 0.0 | K7K8S9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G23590.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6672 | 32 | 49 | Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 3e-68 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G221200.1.p |
Entrez Gene | 100790009 |
Publications ? help Back to Top | |||
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