PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G210600.1.p
Common NameGLYMA_06G210600, LOC100798555
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TCP
Protein Properties Length: 397aa    MW: 46010.9 Da    PI: 6.3859
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G210600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP131.48.6e-411252862136
                  TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................ssssas 71 
                          +gk+drhski T++g+RdRR+Rls+e+a+rfF Lqd+L fdk+skt+eWLl+qak +i  l++                     +ss++s
  Glyma.06G210600.1.p 125 PGKRDRHSKINTARGLRDRRMRLSLEVAKRFFGLQDMLNFDKASKTVEWLLNQAKVEINRLVKEkqkqqqqkkkeendhhyyqsCSSASS 214
                          689*************************************************************77666666666555555555444444 PP

                  TCP  72 ec......eaesssssasnsssg..............kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                          ec                                   + +k  + + k++++ +++  lake r++ar+rarertrekmr++ +l
  Glyma.06G210600.1.p 215 ECdqegvsC-------------LdevvvsgdqeqqqeRVEKVVKRKVKNSRKISAFDPLAKECRERARERARERTREKMRNRGVL 286
                          554444432.............03333333333333344444445666666777799999*********************9765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036346.0E-44126282IPR005333Transcription factor, TCP
PROSITE profilePS5136932.352127185IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.756262279IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQSQSSDTFP SHNRNDPISY YDPAFYYYNS RPFFIDSESN PTSKQENNNN NCDLVPSPPP  60
PLSFFHFPSP TFEDTQNQIF LEQRHDFLLQ FYHQPLPQDP EPQPVITTMD LSVKKSDQIQ  120
RKRVPGKRDR HSKINTARGL RDRRMRLSLE VAKRFFGLQD MLNFDKASKT VEWLLNQAKV  180
EINRLVKEKQ KQQQQKKKEE NDHHYYQSCS SASSECDQEG VSCLDEVVVS GDQEQQQERV  240
EKVVKRKVKN SRKISAFDPL AKECRERARE RARERTREKM RNRGVLAEES KQCGEETNQD  300
LIQLGSWNPF ETGDQESAGA KRTTTHSVAE HPSSLDVITI EAKEQSYHAA KEHDDDDDDS  360
LVVLSKWSPS LIFNNYGFSQ DHQFAEFQSL GKLWEA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266278RARERARERTREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G210600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014632112.10.0transcription factor DICHOTOMA
TrEMBLK7KWC80.0K7KWC8_SOYBN; Uncharacterized protein
STRINGGLYMA06G23410.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.28e-26TCP family protein