PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G209000.5.p | ||||||||
Common Name | GLYMA_06G209000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YB | ||||||||
Protein Properties | Length: 153aa MW: 17255.7 Da PI: 5.237 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 62.7 | 7.9e-20 | 11 | 80 | 3 | 72 |
NF-YB 3 eqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwala 72 ++d+ lP a +++i+k++lP + ++++da++++ ec +efi +v+se+++ c++e+r+ti+++ +l al+ Glyma.06G209000.5.p 11 KEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCNKEERRTIAPEHVLKALG 80 6899**************************************************************9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 5.7E-27 | 8 | 79 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 2.51E-24 | 12 | 80 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.8E-22 | 14 | 79 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MEPMDIVGKA KEDASLPKAT MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE 60 VCNKEERRTI APEHVLKALG VFLKLLNCCI AKVFMQIRSN LCLINYVISS LKCCFLFCIL 120 NFNFYLVSFY VSLLSICEVP VILEIFFFCV AL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1jfi_B | 3e-22 | 12 | 79 | 12 | 78 | Transcription Regulator NC2 beta chain |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.4205 | 1e-125 | cotyledon| flower| hypocotyl| leaf| meristem| pod| root| seed coat| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G209000.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF464906 | 1e-132 | AF464906.1 Glycine max repressor protein (Dr1) mRNA, complete cds. | |||
GenBank | BT089816 | 1e-132 | BT089816.1 Soybean clone JCVI-FLGm-2L20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028228844.1 | 5e-53 | protein Dr1 homolog | ||||
Swissprot | P49592 | 1e-49 | NC2B_ARATH; Protein Dr1 homolog | ||||
TrEMBL | A0A0R0JJZ0 | 1e-103 | A0A0R0JJZ0_SOYBN; Uncharacterized protein | ||||
STRING | XP_007138352.1 | 3e-52 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23090.2 | 1e-51 | nuclear factor Y, subunit B13 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G209000.5.p |
Publications ? help Back to Top | |||
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