PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G204300.1.p | ||||||||
Common Name | GLYMA_06G204300, LOC100804574 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 391aa MW: 43113.1 Da PI: 9.6905 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 90.6 | 3.4e-28 | 55 | 143 | 3 | 83 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......ssssasec..eaesssssas 83 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ k i++l+ + ++ ++ ++ ++ss+as Glyma.06G204300.1.p 55 GGKDRHSKVCTIRGLRDRRIRLSVPTAIQLYDLQDKLGLSQPSKVIDWLLEATKFDIDKLPPLqfpqgfgQFHHHPQTlfP-FHESSAAS 143 79*************************************************************555555522222222321.11111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 28.287 | 56 | 114 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.8E-26 | 56 | 168 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 391 aa Download sequence Send to blast |
MMLTMMASSR EGYQAKQEGD TTTNIDKFSK ASSTTSRQWS AFRNPRIVRV SRSFGGKDRH 60 SKVCTIRGLR DRRIRLSVPT AIQLYDLQDK LGLSQPSKVI DWLLEATKFD IDKLPPLQFP 120 QGFGQFHHHP QTLFPFHESS AASHQLSLGP FSDASSTFVR DGGIQNLMAK SRYWENINSM 180 SRLRGNKEAE KGKWIKTSEE ENHDQDGVVG GYNNLQVSTQ RLFPMGSSTT TTTHSLLPGL 240 LNNSMPYNAY SSEPSSLSLS QFGSHGLFPS QQVDPNPSSG NNGVQFQSSL SLPSSGSQLL 300 FGSSSATPSM FTTYAPFIAP SVDPDPRQFN HIHQFLNSGS QILPPHPLIP SLHHPFNSQI 360 RPFPAALFSS KLLDSDSSNH SQQDHKGSTS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 4e-18 | 61 | 115 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G204300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528227.2 | 0.0 | transcription factor TCP5 | ||||
TrEMBL | I1KD23 | 0.0 | I1KD23_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G22240.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF932 | 34 | 119 | Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60970.1 | 2e-55 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G204300.1.p |
Entrez Gene | 100804574 |