PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G198300.1.p

Common Name

GLYMA_06G198300, LOC100784971

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Nin-like

Protein Properties

Length: 413aa MW: 46296.4 Da PI: 4.5391

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G198300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	53.6	4.5e-17	311	359	4	52
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++l+dls F+l+i +AA +L+v+ +++K iCR+ +kRWP+Rk++sl Glyma.06G198300.1.p 311 RMTLSDLSGVFHLTISAAAVKLDVSNSTVKSICRRGKLKRWPQRKVQSL 359 689*******************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	14.22	299	380	IPR003035	RWP-RK domain
Pfam	PF02042	1.1E-16	312	359	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 413 aa Download sequence Send to blast
MDNNNNNSGF VPNNDTDDDC TFLQTLLEMD PQHFYLPTEE FDSLSQQQQQ KNDPFGVEKG 60 NKVSFLQGNN NNDFPIGEGV VPDVVDVEEE EGPPRGAGKE LIPEGQGDRF FIHGDDIFFF 120 GEGGVGNNVD PPQENQTQPP NNQDVRSLCP WPPPPEPFSC SCCEVLRQIN YTNGVRFDKL 180 EIHGTVGVIN HAICHVEDKT SNRPPRDTYQ IIDFCNKNTE EIRNFLNVYC KERIEAGFIP 240 IEDPSMSAFY DALCTGMDWT EVSNDVDDDL GPPNGTEQES ESEPEAGNGR RASTSRPRRR 300 DMAVQRQRVP RMTLSDLSGV FHLTISAAAV KLDVSNSTVK SICRRGKLKR WPQRKVQSLA 360 KKVRVLVRAL NSPDPGVKRR TQDEIRRLQK EIIENCGGIT PTGIPMLQFD EE*

Sequence ? help Back to Top

Protein Sequence Length: 413 aa Download sequence Send to blast

MDNNNNNSGF VPNNDTDDDC TFLQTLLEMD PQHFYLPTEE FDSLSQQQQQ KNDPFGVEKG  60
NKVSFLQGNN NNDFPIGEGV VPDVVDVEEE EGPPRGAGKE LIPEGQGDRF FIHGDDIFFF  120
GEGGVGNNVD PPQENQTQPP NNQDVRSLCP WPPPPEPFSC SCCEVLRQIN YTNGVRFDKL  180
EIHGTVGVIN HAICHVEDKT SNRPPRDTYQ IIDFCNKNTE EIRNFLNVYC KERIEAGFIP  240
IEDPSMSAFY DALCTGMDWT EVSNDVDDDL GPPNGTEQES ESEPEAGNGR RASTSRPRRR  300
DMAVQRQRVP RMTLSDLSGV FHLTISAAAV KLDVSNSTVK SICRRGKLKR WPQRKVQSLA  360
KKVRVLVRAL NSPDPGVKRR TQDEIRRLQK EIIENCGGIT PTGIPMLQFD EE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G198300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028234278.1	0.0	uncharacterized protein LOC114414137
TrEMBL	A0A445KC41	0.0	A0A445KC41_GLYSO; Uncharacterized protein
STRING	GLYMA06G21406.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7478	28	46
Representative plant	OGRP10333	4	8

Link Out ? help Back to Top
Phytozome	Glyma.06G198300.1.p
Entrez Gene	100784971