PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G195600.1.p | ||||||||
Common Name | GLYMA_06G195600, LOC100818639 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 396aa MW: 43230.5 Da PI: 8.0832 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 56.6 | 5.7e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT +Ed++l+ +++++G+g+W+t +++ g+ R++k+c++rw++yl Glyma.06G195600.1.p 14 KGAWTVQEDQKLIAYIQKHGTGSWRTLPQKAGLQRCGKSCRLRWFNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.5 | 2.3e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++eE++ ++++ + lG++ W++Ia++++ +Rt++++k++w++yl Glyma.06G195600.1.p 67 RGKLSQEEEQTIIKLQAVLGNR-WSSIAKHLP-KRTDNEIKNYWNSYL 112 7999******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.101 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-29 | 12 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.1E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.9E-16 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.42E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.805 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 65 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.01E-12 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MGRSPCCSHE ELRKGAWTVQ EDQKLIAYIQ KHGTGSWRTL PQKAGLQRCG KSCRLRWFNY 60 LRPDIKRGKL SQEEEQTIIK LQAVLGNRWS SIAKHLPKRT DNEIKNYWNS YLRKQFEKNA 120 GDSSSPKPIS SDSSPESKSN DMCMVPLEKT DCHEPNTNQS HQHKLSKSTS SSTHLLNKVA 180 SKILASGYLE AIKSCQPVVA GNSKSEGVVK SGIGPQKDNI RDPLVPNLTS PSHSVTSAKL 240 LNKMATSLPH KVYGLEAVKA VFSKLMESSE KGGIATSDGS SFVGSDQVGS CLNALSPFED 300 GPHISKIIDS PSSPTLMFNQ VTTPSCFSED NEDNWQCVSS NYVSFRNCAA SGGGGDCSVS 360 EINLGESSSS TSCFLFENAD LGTCDDEIRK YIQYL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-29 | 11 | 117 | 4 | 109 | B-MYB |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.22373 | 0.0 | vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G195600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031189 | 0.0 | KT031189.1 Glycine max clone HN_CCL_77 MYB/HD-like transcription factor (Glyma04g33210.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528196.1 | 0.0 | transcription factor MYB51 | ||||
Refseq | XP_028237269.1 | 0.0 | transcription factor MYB51-like | ||||
TrEMBL | A0A0B2R339 | 0.0 | A0A0B2R339_GLYSO; Transcription factor MYB16 | ||||
TrEMBL | I1KCU7 | 0.0 | I1KCU7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G21040.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16999 | 6 | 8 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15310.1 | 2e-62 | myb domain protein 16 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G195600.1.p |
Entrez Gene | 100818639 |