PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G190800.1.p | ||||||||
Common Name | GLYMA_06G190800, LOC100804403 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | WRKY | ||||||||
Protein Properties | Length: 616aa MW: 66829.6 Da PI: 6.5147 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.5 | 1.5e-29 | 250 | 309 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++ +tYeg+Hnh+ Glyma.06G190800.1.p 250 MNDGCQWRKYGQKISKGNPCPRAYYRCTVApSCPVRKQVQRCAQDMSILFTTYEGNHNHP 309 58***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.1E-30 | 235 | 311 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.48E-26 | 243 | 311 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.99 | 245 | 311 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.4E-35 | 250 | 310 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.2E-25 | 251 | 309 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 616 aa Download sequence Send to blast |
MEFGSERSGH EVKDEKRSES SVGDEEDRRE QEIVTQEPPL STTERSTVEA GPNASSLTKK 60 EEAVDELEVA KAEMGEVMEE NQRLKTCLNR ILNDYRALQM QFHNIVEQET KDSSDQKVNN 120 NNDQYQIDES NLVSLSLGRL PTRNNNKVPN NKPLKEEAEK EDKEGLSLGL DCKFETSKSG 180 ISTTEYLPIH QSPNNSVEEV PKEEAAGESW QPGKGIKTAR DATGEDEVSQ QNPAKKARVC 240 VRARCDTPTM NDGCQWRKYG QKISKGNPCP RAYYRCTVAP SCPVRKQVQR CAQDMSILFT 300 TYEGNHNHPL PLSATAMAST TSAAASMLLS GSSTSHSGTR PSTAMTTADL HGMNFFLSDG 360 SKLSKQYYLS HPAALSSSPS HPTITLDLTS NNNPSSSSSA ALVKFTSNSN YNNTQRYPLS 420 TSLNFSSSES NNATTSWSNN GFLSYNNTLP YNSNRNVTNV LSNINLGRQQ QQPMENIYNS 480 YMQRNNNVPI SPPQHSLPDT IAAATKVITA DPNFQSALAA ALTTIIGSGS TTQGNHGGAG 540 ENLSQKMKWG ELFPSSSSAL PSSSTKVNGC ASSFLNKSAA NTQPGTALMF LQPPLPLSSP 600 KSASGSPGDH IDKRN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-20 | 237 | 311 | 1 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G190800.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC236173 | 0.0 | AC236173.2 Glycine max clone GM_WBb0081G04, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003528183.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Refseq | XP_028237211.1 | 0.0 | probable WRKY transcription factor 61 | ||||
Swissprot | A0A3Q7GFB5 | 1e-122 | WK72A_SOLLC; WRKY transcription factor 72A | ||||
TrEMBL | A0A445KBU3 | 0.0 | A0A445KBU3_GLYSO; Putative WRKY transcription factor 72 isoform A | ||||
TrEMBL | I1KCP9 | 0.0 | I1KCP9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA06G20300.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF650 | 34 | 134 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15130.1 | 4e-65 | WRKY DNA-binding protein 72 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G190800.1.p |
Entrez Gene | 100804403 |
Publications ? help Back to Top | |||
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