PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G190200.1.p
Common NameGLYMA_06G190200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HD-ZIP
Protein Properties Length: 327aa    MW: 36832.5 Da    PI: 4.4454
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G190200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.64.5e-1891144356
                          --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
             Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                          k+++++ eq++ Le+ F +++++  e++  LAk+lgL+ rqV +WFqNrRa++k
  Glyma.06G190200.1.p  91 KKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWK 144
                          56689************************************************9 PP
2HD-ZIP_I/II127.65.1e-4190182193
          HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 
                          ekkrrls eqvk+LE+sF+ee+kLeperK  la+eLglqprqva+WFqnrRAR+ktkq+Ekdy++L+++y+ lk++ ++L +e+++L++e
  Glyma.06G190200.1.p  90 EKKRRLSVEQVKFLEKSFDEENKLEPERKIWLAKELGLQPRQVAIWFQNRRARWKTKQMEKDYDSLQASYNDLKANYDNLLREKDKLKAE 179
                          69**************************************************************************************99 PP

          HD-ZIP_I/II  91 lke 93 
                          +++
  Glyma.06G190200.1.p 180 VAR 182
                          875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.31E-1978148IPR009057Homeodomain-like
PROSITE profilePS5007116.98986146IPR001356Homeobox domain
SMARTSM003895.6E-1989150IPR001356Homeobox domain
CDDcd000864.20E-1891147No hitNo description
PfamPF000462.6E-1591144IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.607.2E-1993154IPR009057Homeodomain-like
PRINTSPR000319.1E-5117126IPR000047Helix-turn-helix motif
PROSITE patternPS000270121144IPR017970Homeobox, conserved site
PRINTSPR000319.1E-5126142IPR000047Helix-turn-helix motif
PfamPF021833.5E-16146187IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MAAGTVFCAA ATAASNLTTT TFLHNQTPPS TSSQPPLDSL FLSASSPFLG SRSIVSFGDV  60
QGGKGCNDSF FRPYDENGDE DMDEYFHQPE KKRRLSVEQV KFLEKSFDEE NKLEPERKIW  120
LAKELGLQPR QVAIWFQNRR ARWKTKQMEK DYDSLQASYN DLKANYDNLL REKDKLKAEV  180
ARLTEKVLGR EKNESHLEQA ETNGLQEPLH KSLVDSASEG EGSKVTFEAC KQEDISSAKS  240
DIFDSSESPQ YTDGVHSALL ETGDSSYVFE PDRSDVSQDE EDNLSKTLLP HYIFPKLEDV  300
DYSDPPHGSC NFGIPEEDQA IWSWPY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138146RRARWKTKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.310060.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G190200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY8236710.0AY823671.1 Glycine max HDZip I protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237881.20.0HDZip I protein
RefseqXP_028237206.10.0homeobox-leucine zipper protein HAT5-like
TrEMBLA0A445KBU20.0A0A445KBU2_GLYSO; Homeobox-leucine zipper protein HAT5
TrEMBLI1KCP40.0I1KCP4_SOYBN; Uncharacterized protein
STRINGGLYMA06G20230.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Representative plantOGRP12916189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-45homeobox 1