PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G187600.1.p | ||||||||
Common Name | GLYMA_06G187600, MYB183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 295aa MW: 31869.7 Da PI: 8.9334 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.3 | 4.1e-14 | 81 | 125 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + ++ G+g+W+ I+r k+Rt+ q+ s+ qky Glyma.06G187600.1.p 81 PWTEEEHKLFLVGLQKVGKGDWRGISRNYVKTRTPTQVASHAQKY 125 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.519 | 74 | 130 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.21E-17 | 76 | 130 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-16 | 77 | 128 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.6E-9 | 78 | 128 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.19E-9 | 81 | 126 | No hit | No description |
Pfam | PF00249 | 2.3E-11 | 81 | 125 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-10 | 81 | 125 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006338 | Biological Process | chromatin remodeling | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0035066 | Biological Process | positive regulation of histone acetylation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0003713 | Molecular Function | transcription coactivator activity | ||||
GO:0004402 | Molecular Function | histone acetyltransferase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MPLSSSSSSA VDSAVSGEIM LFGVRVVVDS MRKSVSMNNL SQYELPRDAA NAKDDAAGYA 60 SADDAAPINS DKNRDRKRGI PWTEEEHKLF LVGLQKVGKG DWRGISRNYV KTRTPTQVAS 120 HAQKYFLRRT NLNRRRRRSS LFDITTDSVS TTPMEEGVQI QHQDNVSLFH PVYPVTPEGS 180 NMNGFPKMSM YPKDVGSGVM SVQAGNPMET LTLGQGNVEQ NGPSTKLVCT TPIVPDHRGS 240 TVSDITASLS SIDPPTLSLG LSLSSSPRQT SSSIHAALHA LPYFNNQDSI ISAA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52135 | 0.0 | cotyledon| hypocotyl| leaf| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds selectively to the DNA sequence 5'-[GA]GATAA-3' and may act as a transcription factor involved in the regulation of drought-responsive genes. Enhances stomatal closure in response to abscisic acid (ABA). Confers drought and salt tolerance. {ECO:0000269|PubMed:21030505}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G187600.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by drought, high salinity, and ABA. {ECO:0000269|PubMed:21030505}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031190 | 0.0 | KT031190.1 Glycine max clone HN_CCL_89 MYB/HD-like transcription factor (Glyma04g34720.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235999.1 | 0.0 | MYB transcription factor MYB183 | ||||
Refseq | XP_028237179.1 | 0.0 | transcription factor MYB1R1-like | ||||
Swissprot | Q2V9B0 | 8e-66 | MY1R1_SOLTU; Transcription factor MYB1R1 | ||||
TrEMBL | A0A445KBQ9 | 0.0 | A0A445KBQ9_GLYSO; Transcription factor MYB1R1 | ||||
TrEMBL | Q0PJI2 | 0.0 | Q0PJI2_SOYBN; MYB transcription factor MYB183 | ||||
STRING | GLYMA06G19960.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4248 | 31 | 54 | Representative plant | OGRP394 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G74840.2 | 6e-49 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G187600.1.p |
Entrez Gene | 778056 |
Publications ? help Back to Top | |||
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