PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G182200.2.p

Common Name

GLYMA_06G182200, LOC100806697

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 328aa MW: 35855.9 Da PI: 8.1651

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G182200.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.2	1e-39	29	87	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 alkcprC+st+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s Glyma.06G182200.2.p 29 LALKCPRCESTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 87 5789****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-29	21	81	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.6E-33	30	85	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.059	31	85	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	33	69	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 328 aa Download sequence Send to blast
MDSSSSPSGD MLTCSRPMIE RRLRPPHDLA LKCPRCESTH TKFCYYNNYS LSQPRYFCKT 60 CRRYWTKGGT LRNIPVGGGC RKNKKVSAKK SNNDHQLVNN NNSPTQPPPS SSYHHHSHPK 120 DLQLSSFPDV QFSHLSNLLG TNIANPSFME GKYGIGMIEN PRPIDFMMES KLEGIIGSGS 180 SSRNNFDFFG NSDMSMGMTS VGLGDMNSTQ NGLPPNFHHH GLSAFGGMSM SMSLDHGNNN 240 NNSGGNGGSN NYLMDSCQRL MLPYASSNED HNAPIDVKPN PKQLLSLEWQ DQGCSDAGKD 300 SFGYLNGPGS WTGMMNGYGS STTNPLV*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.50326	0.0	meristem\| root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G182200.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003527017.1	0.0	dof zinc finger protein DOF5.6
Refseq	XP_028237115.1	0.0	dof zinc finger protein DOF5.6-like
TrEMBL	A0A0R0JIS7	0.0	A0A0R0JIS7_SOYBN; Uncharacterized protein
TrEMBL	A0A445KBG0	0.0	A0A445KBG0_GLYSO; Dof zinc finger protein DOF5.6 isoform B
TrEMBL	A0A445KBG4	0.0	A0A445KBG4_GLYSO; Dof zinc finger protein DOF5.6 isoform A
TrEMBL	I1KCF8	0.0	I1KCF8_SOYBN; Uncharacterized protein
STRING	GLYMA06G19330.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62940.1	1e-49	Dof family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G182200.2.p
Entrez Gene	100806697