PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G181800.1.p
Common NameGLYMA_06G181800, LOC102662267
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 464aa    MW: 53524.5 Da    PI: 6.2822
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G181800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17186232148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g WT eEd ll+++v+q+G + W+ Ia+ ++ gR +kqc++rw+++l
  Glyma.06G181800.1.p 186 KGQWTIEEDGLLIQLVEQYGLRKWSHIAKILP-GRIGKQCRERWHNHL 232
                          799*****************************.*************97 PP
2Myb_DNA-binding56.56.4e-18238280145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          ++ WT eEd+ l++a+++ G++ W+ Ia++++ gRt++++k++w+
  Glyma.06G181800.1.p 238 KDTWTDEEDKVLIEAHAEVGNK-WAEIAKKLP-GRTENSIKNHWN 280
                          679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.227181236IPR017930Myb domain
SuperFamilySSF466891.31E-31183279IPR009057Homeodomain-like
SMARTSM007171.9E-14185234IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.5E-27187238IPR009057Homeodomain-like
PfamPF139217.3E-17189243No hitNo description
CDDcd001671.38E-14189232No hitNo description
SMARTSM007172.9E-17237285IPR001005SANT/Myb domain
PROSITE profilePS5129422.435237287IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.8E-22239285IPR009057Homeodomain-like
CDDcd001671.32E-13240283No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MDLETMFKES YVSQPMDLQE SCLQPSMKDM LPFGNLPSHG LFQDFHHIDQ FHHVNVSSSI  60
QTPNFDVFDN FTITGSSPDF DFYEFKPFVE DGGNGHGHAH VMDNFLYGNY SLNLPPRNQL  120
DMMVANQSFL PFNPQEIKPS NFVVPDEVSR ISPMNYYKRV GENKNDKSYP TTRRTYKVRK  180
KSNVVKGQWT IEEDGLLIQL VEQYGLRKWS HIAKILPGRI GKQCRERWHN HLRPDIKKDT  240
WTDEEDKVLI EAHAEVGNKW AEIAKKLPGR TENSIKNHWN ATKRRQYSRR KCRSKYPRGT  300
LLQEYIKSLN LDKNPPRDYR RKSSSNYSSA IMSNNETTTS KVSTTAPTLP QTAFQFCAAT  360
DCLAPNYDFN VVPDFFFGEN FFEEGCSIDS LLDGVPCAPL MDNMKDFEGK LQCDDRTMCV  420
PFVNIDENHV ETEMPLEMMG VEVKKELDLV EMMSQISNEI LRV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-461842862104C-Myb DNA-Binding Domain
1msf_C3e-461842862104C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cellularized but not uncellularized female gametophytes. {ECO:0000269|PubMed:16214903}.
UniprotTISSUE SPECIFICITY: Expressed at high levels in the synergid cells of the female gametophyte, and at lower levels in the endosperm of young seeds and the trichomes of young leaves and sepals. {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the motif 5'-GTAACNT-3' in the promoter of target genes (e.g. DD11 and DD18) and promotes their expression within synergid cells (e.g. in the filiform apparatus) in ovules (PubMed:16214903, PubMed:17693534, PubMed:18410484, PubMed:17937500). Required for the formation of the filiform apparatus during synergid cell differentiation in the female gametophyte (PubMed:16214903). Involved in pollen tube guidance to the micropyle (PubMed:16214903, PubMed:17937500, PubMed:23093426). {ECO:0000269|PubMed:16214903, ECO:0000269|PubMed:17693534, ECO:0000269|PubMed:17937500, ECO:0000269|PubMed:18410484, ECO:0000269|PubMed:23093426}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G181800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ6868710.0FJ686871.1 Glycine max clone gmw1-61M05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006582524.10.0transcription factor MYB98
SwissprotQ9S7L23e-92MYB98_ARATH; Transcription factor MYB98
TrEMBLK7KVS40.0K7KVS4_SOYBN; Uncharacterized protein
STRINGGLYMA06G19280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.13e-86myb domain protein 98
Publications ? help Back to Top
  1. Mendes MA, et al.
    Live and let die: a REM complex promotes fertilization through synergid cell death in Arabidopsis.
    Development, 2016. 143(15): p. 2780-90
    [PMID:27338615]