PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.06G163600.1.p
Common NameGLYMA_06G163600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family LFY
Protein Properties Length: 410aa    MW: 46244 Da    PI: 6.7394
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.06G163600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY6451.1e-19613951386
              FLO_LFY   1 mdpeafsaslfkwdpraaa....aapp...arlleeaavseap....leaaaaaaarklreleelfkayGvryltvakiaelGftvstLv 79 
                          mdp+af+aslfkwdpr++        p   +  l e av+++p    ++ + aaa r+l +leelf+ayG+ry+t+akiaelGftvstLv
  Glyma.06G163600.1.p   1 MDPDAFTASLFKWDPRTVLppapP--PpppRPPLLEYAVAPPPvtpsFHPSRAAAPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTLV 88 
                          9***************99866441..1344444555555555543333444455555677****************************** PP

              FLO_LFY  80 dmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrk..llsedeet.aldalsqeglseepvqe.ekeaagsgg 165
                          dmkdeeldd+m+sls+ifr+dllvGeryGikaavraerrr+e+++ +++ ++  lls+d++t aldalsqeglseepv + ekea+gsgg
  Glyma.06G163600.1.p  89 DMKDEELDDMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVEDDDIKRRNNNnnLLSADTTTnALDALSQEGLSEEPVMQrEKEAVGSGG 178
                          *******************************************98666554344778887766**************9996777888888 PP

              FLO_LFY 166 eglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargkknGLDYLfdL 255
                          ++  ++e+v+a+e+++++++++++  + k ++ +++ +ee ed+e e++++++ ++ +g erqrehPfivtepgevargkknGLDYLf+L
  Glyma.06G163600.1.p 179 GS--TWEVVVAAEERRKQQRRRRT--RMKTNNLHHEDNEELEDDEGEQNDEGNINTGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHL 264
                          77..99999988544333333332..2222222222222223333333333444566688****************************** PP

              FLO_LFY 256 yeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplv 345
                          yeqCrefL+qvq+iak+rGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrrafkergenvGawrqacykplv
  Glyma.06G163600.1.p 265 YEQCREFLMQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRAFKERGENVGAWRQACYKPLV 354
                          ****************************************************************************************** PP

              FLO_LFY 346 aiaarqgwdidavfnahprLsiWYvPtkLrqLChlerskas 386
                          aiaarqgwdida+fnahprLsiWYvPtkLrqLCh+er++a+
  Glyma.06G163600.1.p 355 AIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAA 395
                          *************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.3E-2121395IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRTVLP PAPPPPPPRP PLLEYAVAPP PVTPSFHPSR AAAPRELGGL  60
EELFQAYGIR YYTAAKIAEL GFTVSTLVDM KDEELDDMMN SLSQIFRWDL LVGERYGIKA  120
AVRAERRRVE DDDIKRRNNN NNLLSADTTT NALDALSQEG LSEEPVMQRE KEAVGSGGGS  180
TWEVVVAAEE RRKQQRRRRT RMKTNNLHHE DNEELEDDEG EQNDEGNINT GGGCERQREH  240
PFIVTEPGEV ARGKKNGLDY LFHLYEQCRE FLMQVQAIAK DRGEKCPTKV TNQVFRYAKK  300
AGASYINKPK MRHYVHCYAL HCLDEEVSNE LRRAFKERGE NVGAWRQACY KPLVAIAARQ  360
GWDIDAIFNA HPRLSIWYVP TKLRQLCHAE RNSAAASSSV SAGSAHLPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1102334042173PROTEIN LEAFY
2vy2_A1e-1102334042173PROTEIN LEAFY
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf, leaflet, inflorescence and lateral shoot primordia on the main shoot axis, and in floral organ and carpel primordia.
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.06G163600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4488100.0DQ448810.1 Glycine max LEAFY-like protein (LFY) mRNA, LFY-1 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003526918.20.0protein UNIFOLIATA isoform X2
RefseqXP_028236681.10.0protein UNIFOLIATA-like
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLI1KBW80.0I1KBW8_SOYBN; Uncharacterized protein
STRINGGLYMA06G17170.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Representative plantOGRP70181619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-146floral meristem identity control protein LEAFY (LFY)