PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.06G157400.1.p | ||||||||
Common Name | GLYMA_06G157400, Glyma06g16440.1, NAC018 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NAC | ||||||||
Protein Properties | Length: 296aa MW: 34173.5 Da PI: 6.5172 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.7 | 9.3e-53 | 7 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 lppGfrFhPtdeelv++yL++k++g+++ + +ikevd+yk++Pw+Lp+ + +ekewyfFs+rd+ky++g+r+nra+ sgyWkatg dk Glyma.06G157400.1.p 7 LPPGFRFHPTDEELVNHYLCRKCAGQPIAV-PIIKEVDLYKFDPWQLPEIGYYGEKEWYFFSPRDRKYPNGSRPNRAAGSGYWKATGADK 95 79**************************99.88***************7666789*********************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ + ++ g+kk Lvfy g+apkg+kt+W+mheyrl Glyma.06G157400.1.p 96 AIGK--PKALGIKKALVFYAGKAPKGVKTNWIMHEYRL 131 **98..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-62 | 3 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.449 | 7 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.8E-28 | 8 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MKGELELPPG FRFHPTDEEL VNHYLCRKCA GQPIAVPIIK EVDLYKFDPW QLPEIGYYGE 60 KEWYFFSPRD RKYPNGSRPN RAAGSGYWKA TGADKAIGKP KALGIKKALV FYAGKAPKGV 120 KTNWIMHEYR LANVDRSASK KNNNNLRLDD WVLCRIYNKK GKIEKYNTTA PKMNLEMIHS 180 FEHENETKPE IHKLGNEQLL YTETSDSVPR LHTDSSSSEH VVSPDVRCER EVQSDPKWNN 240 DDYDLGLQLE NAFDFQFNYL DDNNLSVDDD PFGTVQYQMG QLSPLQDMFM YLQKM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-83 | 2 | 165 | 10 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.55396 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.06G157400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JX569046 | 0.0 | JX569046.1 Glycine max NAC transcription factor (NAC018) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001242877.2 | 0.0 | NAC transcription factor | ||||
Refseq | XP_028236488.1 | 0.0 | NAC domain-containing protein 2-like | ||||
Swissprot | Q39013 | 1e-121 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | A0A445KAA8 | 0.0 | A0A445KAA8_GLYSO; NAC domain-containing protein 2 isoform A | ||||
TrEMBL | U3LZE5 | 0.0 | U3LZE5_SOYBN; NAC transcription factor | ||||
STRING | GLYMA06G16440.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-123 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.06G157400.1.p |