PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.06G152300.2.p

Common Name

GLYMA_06G152300, LOC100803688

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 204aa MW: 23055.9 Da PI: 6.2965

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.06G152300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	24.6	4.4e-08	124	164	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+ri +++ L++l+P +K++ a++L +A+ Y+k L Glyma.06G152300.2.p 124 ARHRRERISEKIRILQRLVPGG-----TKMDTASMLDEAILYVKFL 164 699***************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.481	115	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.63E-13	120	179	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.4E-12	120	177	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.65E-9	121	169	No hit	No description
SMART	SM00353	4.6E-12	121	170	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-5	125	164	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MDTNQNITTT GNHENMGRDE HNNIILHDHH HHNQIPTPHY NHHPLHIVQP SSNVAPSFVS 60 DVLGVVHFEE EDEDEEEVEE ELGAMKEMMY KMAVMQPVDI DPASVRKPKR RNVRISDDPQ 120 SVAARHRRER ISEKIRILQR LVPGGTKMDT ASMLDEAILY VKFLKRQISS ITNTNASMDI 180 PVIGMEFNTR GHGHAGDASS IHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.06G152300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006581762.1	1e-149	transcription factor HEC3
TrEMBL	K7KV73	1e-147	K7KV73_SOYBN; Uncharacterized protein
STRING	GLYMA06G15730.2	1e-148	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00120.1	6e-45	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.06G152300.2.p
Entrez Gene	100803688